Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-05 23:55 -0400 (Sat, 05 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4807
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4576
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4605
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.13.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-05 09:55 -0400 (Sat, 05 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 686a27c
git_last_commit_date: 2024-10-29 11:04:36 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
StartedAt: 2025-04-05 16:01:12 -0400 (Sat, 05 Apr 2025)
EndedAt: 2025-04-05 16:04:53 -0400 (Sat, 05 Apr 2025)
EllapsedTime: 220.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-04-05 16:01:50.095][biodb::testContext]
biodb.INFO [2025-04-05 16:01:50.098][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-05 16:01:50.100][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-04-05 16:01:50.100][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-05 16:01:50.101][biodb::testContext]
biodb.INFO [2025-04-05 16:01:50.106][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-04-05 16:01:50.108][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-05 16:01:50.115][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:50.116][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-05 16:01:50.116][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.120][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-05 16:01:50.135][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.139][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-05 16:01:50.140][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.143][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-05 16:01:50.144][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-05 16:01:50.145][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-05 16:01:50.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.148][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-05 16:01:50.149][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-05 16:01:50.150][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.153][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-05 16:01:50.154][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-05 16:01:50.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.157][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-05 16:01:50.158][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-05 16:01:50.159][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-05 16:01:50.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.162][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-05 16:01:50.163][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.166][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-05 16:01:50.167][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-05 16:01:50.168][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-05 16:01:50.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.171][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-05 16:01:50.172][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-05 16:01:50.173][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-05 16:01:50.174][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-05 16:01:50.174][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-05 16:01:50.175][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-05 16:01:50.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.179][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-05 16:01:50.179][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-05 16:01:50.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.183][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-05 16:01:50.184][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-05 16:01:50.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.187][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-05 16:01:50.188][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-05 16:01:50.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.191][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-05 16:01:50.192][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-05 16:01:50.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.195][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-05 16:01:50.196][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-05 16:01:50.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.199][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-05 16:01:50.200][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-05 16:01:50.219][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-05 16:01:50.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.223][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-05 16:01:50.223][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-05 16:01:50.224][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-05 16:01:50.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.230][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-05 16:01:50.258][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.277][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-05 16:01:50.278][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.279][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:50.280][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.281][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.281][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.283][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-05 16:01:50.284][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:50.285][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.286][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-05 16:01:50.287][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:50.288][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.288][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.289][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:50.289][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:50.289][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:50.289][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-05 16:01:50.289][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-05 16:01:50.290][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:50.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:50.293][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.296][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.297][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:50.297][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:50.298][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.299][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.300][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-05 16:01:50.302][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.303][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-05 16:01:50.304][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.304][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:50.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.307][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.309][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-05 16:01:50.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:50.311][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.311][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-05 16:01:50.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:50.313][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.314][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.315][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:50.315][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:50.315][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:50.315][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-05 16:01:50.315][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-05 16:01:50.316][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:50.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:50.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.321][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.322][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:50.323][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:50.324][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.325][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.326][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-05 16:01:50.328][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.329][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-05 16:01:50.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:50.331][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.332][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.333][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.334][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.335][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-05 16:01:50.336][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:50.336][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.337][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-05 16:01:50.338][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:50.339][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.340][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.341][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.342][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:50.343][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.344][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:50.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.347][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.348][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.348][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:50.349][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:50.350][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.351][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.352][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-05 16:01:50.354][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.354][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-05 16:01:50.355][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:50.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.361][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.362][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-05 16:01:50.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:50.364][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.364][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-05 16:01:50.365][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:50.366][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.367][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.368][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.369][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:50.370][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.371][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:50.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.374][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.375][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.375][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:50.376][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:50.377][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.378][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:50.381][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:50.382][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.455][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-05 16:01:50.459][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-05 16:01:50.460][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-05 16:01:50.461][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-05 16:01:50.463][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-05 16:01:50.464][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-05 16:01:50.465][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-05 16:01:50.466][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-05 16:01:50.467][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-05 16:01:50.469][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-05 16:01:50.470][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-05 16:01:50.471][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-05 16:01:50.472][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-05 16:01:50.474][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-05 16:01:50.475][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-05 16:01:50.476][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-05 16:01:50.477][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-05 16:01:50.478][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-05 16:01:50.480][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-05 16:01:50.481][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-05 16:01:50.482][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-05 16:01:50.483][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-05 16:01:50.485][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-05 16:01:50.486][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-05 16:01:50.487][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-05 16:01:50.488][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-05 16:01:50.489][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-05 16:01:50.491][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-05 16:01:50.492][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-05 16:01:50.493][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-05 16:01:50.494][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-05 16:01:50.495][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-05 16:01:50.497][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-05 16:01:50.498][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-05 16:01:50.499][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-05 16:01:50.500][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-05 16:01:50.501][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-05 16:01:50.503][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-05 16:01:50.504][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-05 16:01:50.505][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-05 16:01:50.506][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-05 16:01:50.507][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-05 16:01:50.509][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-05 16:01:50.510][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-05 16:01:50.511][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-05 16:01:50.512][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-05 16:01:50.513][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-05 16:01:50.515][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-05 16:01:50.516][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-05 16:01:50.517][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-05 16:01:50.518][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-05 16:01:50.520][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-05 16:01:50.521][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-05 16:01:50.522][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-05 16:01:50.523][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-05 16:01:50.525][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-05 16:01:50.526][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-05 16:01:50.527][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-05 16:01:50.528][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-05 16:01:50.529][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-05 16:01:50.530][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-05 16:01:50.532][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-05 16:01:50.533][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-05 16:01:50.534][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-05 16:01:50.535][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-05 16:01:50.536][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-05 16:01:50.538][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-05 16:01:50.539][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-05 16:01:50.540][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-05 16:01:50.541][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-05 16:01:50.542][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-05 16:01:50.543][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-05 16:01:50.545][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-05 16:01:50.546][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-05 16:01:50.547][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-05 16:01:50.548][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-05 16:01:50.549][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-05 16:01:50.551][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-05 16:01:50.552][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-05 16:01:50.553][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-05 16:01:50.554][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-05 16:01:50.555][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-05 16:01:50.557][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-05 16:01:50.562][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-05 16:01:50.563][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-04-05 16:01:50.566][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:50.566][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.568][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:50.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:50.671][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-04-05 16:01:50.680][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-04-05 16:01:50.681][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.682][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.683][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.684][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:50.685][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.686][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.687][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.688][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-04-05 16:01:50.688][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-05 16:01:50.689][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:50.690][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.691][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-04-05 16:01:50.692][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-04-05 16:01:50.693][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-04-05 16:01:50.694][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:50.695][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:50.695][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:50.695][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:50.696][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-05 16:01:50.696][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.698][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:50.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:50.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:50.700][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:50.701][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:50.701][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-04-05 16:01:50.702][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:50.703][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:50.704][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:50.705][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-04-05 16:01:50.705][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-04-05 16:01:50.710][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-05 16:01:50.711][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-05 16:01:50.712][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-04-05 16:01:50.714][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-05 16:01:50.715][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-05 16:01:50.716][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-05 16:01:50.736][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-04-05 16:01:50.737][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-04-05 16:01:50.741][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-04-05 16:01:50.744][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-04-05 16:01:50.748][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-05 16:01:50.777][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-05 16:01:50.779][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-04-05 16:01:50.780][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-04-05 16:01:50.787][biodb::testThat]
biodb.INFO [2025-04-05 16:01:50.788][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-05 16:01:50.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:50.789][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:50.792][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-04-05 16:01:50.794][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:50.796][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:50.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:50.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:50.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:50.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:50.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:50.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:50.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:50.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.847][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:50.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:50.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.875][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:50.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:50.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:50.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:50.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:50.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:50.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:50.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:50.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:50.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:50.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:50.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:50.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:50.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:50.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:50.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:50.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:50.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:51.007][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-04-05 16:01:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.234][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.258][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.333][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.511][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.545][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-04-05 16:01:51.578][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:51.580][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:51.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:51.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:51.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:51.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:51.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:51.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:51.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:51.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:51.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.648][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:51.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:51.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:51.721][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-04-05 16:01:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.893][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.942][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:51.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.996][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:51.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:51.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.021][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.047][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.167][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.175][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.183][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.232][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.239][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.255][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-04-05 16:01:52.256][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:52.257][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:52.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:52.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:52.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:52.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:52.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:52.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:52.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:52.269][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.311][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:52.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.333][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:52.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:52.386][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-04-05 16:01:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.490][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.519][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.520][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.620][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.700][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.725][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:52.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:52.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:52.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:52.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:52.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:52.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:52.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:52.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:52.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.807][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.808][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:52.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.828][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.836][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:52.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:52.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:52.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:52.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:52.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:52.846][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:52.854][biodb::testThat]
biodb.INFO [2025-04-05 16:01:52.855][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-05 16:01:52.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:52.857][biodb::testThat]
biodb.DEBUG[2025-04-05 16:01:52.859][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-04-05 16:01:52.865][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-05 16:01:52.870][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.INFO [2025-04-05 16:01:52.872][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2025-04-05 16:01:52.873][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-04-05 16:01:52.874][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:52.875][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:52.876][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:52.877][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:52.878][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:52.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:52.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:52.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:52.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:52.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:52.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:52.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:52.894][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-04-05 16:01:52.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:52.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:52.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-04-05 16:01:58.995][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-04-05 16:01:59.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:59.520][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-04-05 16:01:59.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2025-04-05 16:01:59.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:59.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:59.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:59.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:59.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:59.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:59.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:59.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2025-04-05 16:01:59.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:59.586][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:59.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2025-04-05 16:02:00.185][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2025-04-05 16:02:00.571][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:00.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2025-04-05 16:02:00.576][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2025-04-05 16:02:00.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:00.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:00.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:00.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:00.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:00.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:00.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:00.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2025-04-05 16:02:00.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:00.597][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:00.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2025-04-05 16:02:00.942][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2025-04-05 16:02:01.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:01.303][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2025-04-05 16:02:01.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2025-04-05 16:02:01.310][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2025-04-05 16:02:01.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:01.313][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-04-05 16:02:01.314][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:01.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:01.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.369][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:01.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.454][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.483][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.484][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.515][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:01.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.579][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.629][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.724][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-04-05 16:02:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:02:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:02:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:02:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:01.773][biodb::testThat]
biodb.INFO [2025-04-05 16:02:01.774][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-05 16:02:01.775][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:01.776][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:01.779][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.781][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.782][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-04-05 16:02:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.829][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-04-05 16:02:01.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-04-05 16:02:01.833][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:01.834][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:01.835][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-04-05 16:02:02.168][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2025-04-05 16:02:02.661][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:02.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2025-04-05 16:02:02.666][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2025-04-05 16:02:02.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:02.672][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:02.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:02.674][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:03.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:03.650][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:03.652][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2025-04-05 16:02:03.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2025-04-05 16:02:03.657][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-04-05 16:02:03.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.671][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.673][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:03.677][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.678][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-05 16:02:03.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:03.679][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:03.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:03.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:03.759][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:03.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:03.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:03.773][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-04-05 16:02:03.789][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.790][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-05 16:02:03.790][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:03.791][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:02:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:02:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:02:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:02:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:02:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:02:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:02:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:02:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:02:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:03.876][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.877][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-05 16:02:03.877][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:03.878][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.890][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.891][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-05 16:02:03.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:03.892][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.900][biodb::testThat]
biodb.INFO [2025-04-05 16:02:03.901][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-05 16:02:03.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:03.902][biodb::testThat]
biodb.DEBUG[2025-04-05 16:02:03.905][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-04-05 16:02:04.660][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-04-05 16:02:05.736][biodb::testThat]
biodb.INFO [2025-04-05 16:02:05.737][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-05 16:02:05.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:05.739][biodb::testThat]
biodb.DEBUG[2025-04-05 16:02:06.095][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-04-05 16:02:06.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.459][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:06.461][biodb::testThat]
biodb.INFO [2025-04-05 16:02:06.461][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-05 16:02:06.462][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:06.463][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:06.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:06.555][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:06.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:06.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:06.558][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:06.608][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:06.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:06.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:06.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:06.614][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-04-05 16:02:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:06.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:06.656][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:06.657][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:06.658][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:07.271][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:07.617][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:07.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2025-04-05 16:02:07.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2025-04-05 16:02:07.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:07.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:07.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:07.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:07.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:07.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:07.642][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-04-05 16:02:07.676][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:07.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-04-05 16:02:07.679][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:07.680][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:07.681][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:07.682][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:07.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:07.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:07.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:07.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:07.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:07.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:07.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:07.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:07.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:07.707][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-04-05 16:02:07.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:07.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:07.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-04-05 16:02:08.057][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-04-05 16:02:08.407][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:08.409][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-04-05 16:02:08.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-04-05 16:02:08.413][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-04-05 16:02:08.415][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:08.416][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:08.416][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:08.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:08.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:08.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:08.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:08.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:08.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:08.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:08.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.433][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:08.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:08.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:08.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:08.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:08.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:08.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:08.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:08.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:08.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.461][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:08.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.464][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.480][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:08.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:08.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:08.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:08.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.486][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:08.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:08.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:08.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:08.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:08.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:08.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:08.528][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-04-05 16:02:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:08.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:08.552][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:08.552][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:08.554][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:08.897][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:09.248][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:09.250][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2025-04-05 16:02:09.253][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2025-04-05 16:02:09.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:09.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:09.292][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-04-05 16:02:09.293][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:09.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-04-05 16:02:09.295][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:09.296][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:09.297][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:09.298][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:09.299][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:09.299][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:09.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:09.314][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-04-05 16:02:09.319][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:09.320][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:09.321][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-04-05 16:02:09.669][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-04-05 16:02:10.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:10.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-04-05 16:02:10.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-04-05 16:02:10.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-04-05 16:02:10.033][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:10.034][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.035][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.046][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.080][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.147][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-04-05 16:02:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:10.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:10.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:10.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.184][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:10.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.212][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-04-05 16:02:10.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:10.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-04-05 16:02:10.215][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:10.216][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:10.217][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:10.217][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:10.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:10.219][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:10.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.229][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-04-05 16:02:10.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:10.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:10.233][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-04-05 16:02:10.587][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-04-05 16:02:10.943][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:10.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-04-05 16:02:10.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-04-05 16:02:10.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-04-05 16:02:10.951][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:10.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.993][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.999][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.006][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.047][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-04-05 16:02:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.071][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-04-05 16:02:11.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:11.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-04-05 16:02:11.074][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:11.075][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:11.076][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:11.077][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:11.078][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:11.078][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:11.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.089][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-04-05 16:02:11.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:11.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:11.093][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-04-05 16:02:11.439][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-04-05 16:02:11.784][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:11.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-04-05 16:02:11.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-04-05 16:02:11.790][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-04-05 16:02:11.792][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:11.793][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:11.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:11.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.804][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:11.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:11.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:11.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:11.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:11.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:11.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:11.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.837][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.843][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.881][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-04-05 16:02:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.909][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-04-05 16:02:11.910][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:11.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-04-05 16:02:11.912][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:11.913][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:11.914][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:11.914][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:11.915][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:11.916][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:11.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.926][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-04-05 16:02:11.928][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:11.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:11.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-04-05 16:02:12.282][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-04-05 16:02:12.630][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:12.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-04-05 16:02:12.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-04-05 16:02:12.637][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-04-05 16:02:12.638][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:12.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:12.640][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:12.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.657][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:12.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:12.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.667][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:12.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:12.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:12.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:12.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:12.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:12.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:12.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.680][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:12.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:12.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:12.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:12.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:12.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:12.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:12.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.731][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-04-05 16:02:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:12.759][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-04-05 16:02:12.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:12.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-04-05 16:02:12.762][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:12.763][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:12.764][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:12.764][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:12.765][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:12.766][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:12.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:12.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-04-05 16:02:12.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:12.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:12.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-04-05 16:02:13.132][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-04-05 16:02:13.489][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:13.491][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-04-05 16:02:13.494][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-04-05 16:02:13.496][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-04-05 16:02:13.497][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:13.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:13.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:13.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:13.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:13.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:13.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:13.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:13.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:13.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:13.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.516][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:13.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:13.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:13.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:13.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:13.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:13.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:13.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:13.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:13.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.554][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:13.555][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:13.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:13.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.560][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:13.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:13.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:13.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:13.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:13.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:13.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:13.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:13.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:13.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:13.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:13.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:13.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:13.627][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-04-05 16:02:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:13.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:13.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:13.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:13.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:13.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:13.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:13.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:13.645][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-04-05 16:02:13.646][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:13.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-04-05 16:02:13.648][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:13.648][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:13.649][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:13.650][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:13.651][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:13.651][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:13.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:13.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:13.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:13.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:13.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:13.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:13.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:13.662][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-04-05 16:02:13.664][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:13.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:13.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-04-05 16:02:14.014][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-04-05 16:02:14.371][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:14.372][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-04-05 16:02:14.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-04-05 16:02:14.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-04-05 16:02:14.379][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:14.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:14.381][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:14.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:14.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.404][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:14.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:14.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:14.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:14.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:14.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:14.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:14.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:14.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.435][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:14.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.447][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:14.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:14.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.453][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:14.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:14.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:14.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:14.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:14.500][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-04-05 16:02:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:14.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:14.518][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-04-05 16:02:14.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:14.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-04-05 16:02:14.521][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:14.522][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:14.523][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:14.523][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:14.524][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:14.525][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:14.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:14.535][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-04-05 16:02:14.537][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:14.538][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:14.539][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-04-05 16:02:14.914][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-04-05 16:02:15.279][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:15.281][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-04-05 16:02:15.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-04-05 16:02:15.292][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-04-05 16:02:15.294][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:15.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:15.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:15.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:15.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:15.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:15.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:15.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:15.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:15.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:15.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.311][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:15.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:15.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:15.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:15.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:15.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:15.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:15.335][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.338][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:15.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.349][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:15.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:15.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.355][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:15.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:15.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:15.367][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:15.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:15.401][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-04-05 16:02:15.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:15.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:15.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:15.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:15.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:15.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:15.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:15.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:15.418][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-04-05 16:02:15.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:15.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-04-05 16:02:15.421][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:15.422][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:15.423][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:15.423][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:15.424][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:15.425][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:15.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:15.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:15.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:15.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:15.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:15.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:15.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:15.439][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-04-05 16:02:15.442][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:15.443][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:15.444][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-04-05 16:02:15.790][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-04-05 16:02:16.142][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:16.144][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-04-05 16:02:16.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-04-05 16:02:16.148][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-04-05 16:02:16.150][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:16.151][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:16.151][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:16.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:16.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:16.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:16.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:16.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:16.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:16.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:16.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.168][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:16.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:16.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:16.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:16.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:16.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:16.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.186][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:16.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:16.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:16.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:16.193][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:16.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.195][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:16.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:16.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:16.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:16.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.207][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:16.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:16.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.220][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:16.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:16.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:16.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:16.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:16.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:16.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:16.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:16.261][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-04-05 16:02:16.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:16.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:16.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:16.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:16.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:16.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:16.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:16.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:16.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:16.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:16.279][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-04-05 16:02:16.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:16.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-04-05 16:02:16.281][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:16.282][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:16.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:16.288][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:16.289][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:16.289][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:16.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:16.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:16.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:16.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:16.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:16.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:16.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:16.300][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-04-05 16:02:16.302][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:16.303][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:16.304][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-04-05 16:02:16.648][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-04-05 16:02:17.002][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:17.003][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-04-05 16:02:17.006][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-04-05 16:02:17.008][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-04-05 16:02:17.009][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:17.010][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:17.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:17.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:17.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.058][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.088][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.123][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-04-05 16:02:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:17.145][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-04-05 16:02:17.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:17.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-04-05 16:02:17.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:17.148][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:17.149][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:17.150][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:17.151][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:17.151][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:17.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:17.162][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-04-05 16:02:17.164][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:17.165][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:17.166][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-04-05 16:02:17.512][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-04-05 16:02:17.865][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:17.866][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-04-05 16:02:17.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-04-05 16:02:17.871][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-04-05 16:02:17.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:17.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:17.874][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:17.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:17.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.923][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.941][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.986][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-04-05 16:02:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.004][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-04-05 16:02:18.005][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:18.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-04-05 16:02:18.007][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:18.008][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:18.009][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:18.009][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:18.010][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:18.011][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:18.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.021][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-04-05 16:02:18.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:18.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:18.025][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-04-05 16:02:18.374][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-04-05 16:02:18.728][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:18.730][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-04-05 16:02:18.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-04-05 16:02:18.734][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-04-05 16:02:18.736][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:18.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:18.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:18.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:18.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.753][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:18.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:18.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:18.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:18.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:18.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:18.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:18.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.787][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:18.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:18.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:18.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:18.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:18.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:18.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:18.850][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-04-05 16:02:18.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:18.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.868][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-04-05 16:02:18.868][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:18.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-04-05 16:02:18.870][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:18.871][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:18.872][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:18.873][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:18.873][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:18.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:18.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.885][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-04-05 16:02:18.887][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:18.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:18.888][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-04-05 16:02:19.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-04-05 16:02:19.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:19.588][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-04-05 16:02:19.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-04-05 16:02:19.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-04-05 16:02:19.595][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:19.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:19.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:19.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:19.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.620][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:19.621][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:19.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:19.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:19.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:19.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:19.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:19.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:19.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:19.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:19.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:19.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:19.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:19.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:19.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:19.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:19.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:19.705][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-04-05 16:02:19.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:19.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:19.723][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-04-05 16:02:19.723][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:19.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-04-05 16:02:19.726][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:19.726][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:19.727][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:19.728][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:19.729][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:19.729][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:19.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:19.740][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-04-05 16:02:19.742][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:19.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:19.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-04-05 16:02:20.095][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-04-05 16:02:20.442][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:20.444][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-04-05 16:02:20.447][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-04-05 16:02:20.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-04-05 16:02:20.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:20.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:20.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:20.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:20.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:20.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:20.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:20.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:20.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:20.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:20.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.475][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:20.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:20.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:20.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:20.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:20.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:20.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:20.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:20.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:20.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:20.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:20.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:20.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:20.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.496][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:20.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.499][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:20.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:20.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:20.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:20.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.514][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:20.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:20.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:20.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:20.556][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-04-05 16:02:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:20.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:20.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:20.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:20.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:20.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:20.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:20.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:20.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:20.574][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-04-05 16:02:20.575][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:20.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-04-05 16:02:20.577][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:20.578][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:20.578][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:20.579][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:20.580][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:20.581][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:20.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:20.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:20.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:20.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:20.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:20.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:20.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:20.591][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-04-05 16:02:20.593][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:20.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:20.595][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-04-05 16:02:20.947][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-04-05 16:02:21.298][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:21.300][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-04-05 16:02:21.302][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-04-05 16:02:21.304][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-04-05 16:02:21.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:21.307][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:21.307][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:21.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:21.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:21.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:21.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:21.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:21.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:21.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:21.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:21.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:21.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:21.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:21.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.357][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:21.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:21.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:21.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.375][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:21.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:21.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:21.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:21.419][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-04-05 16:02:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:21.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:21.437][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-04-05 16:02:21.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:21.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-04-05 16:02:21.440][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:21.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:21.441][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:21.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:21.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:21.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:21.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:21.454][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-04-05 16:02:21.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:21.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:21.457][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-04-05 16:02:21.942][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-04-05 16:02:22.288][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:22.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-04-05 16:02:22.292][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-04-05 16:02:22.294][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-04-05 16:02:22.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:22.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:22.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:22.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:22.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:22.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:22.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:22.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:22.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:22.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:22.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:22.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.338][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:22.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:22.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:22.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.356][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:22.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:22.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:22.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:22.401][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-04-05 16:02:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:22.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:22.421][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-04-05 16:02:22.421][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:22.423][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-04-05 16:02:22.424][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:22.425][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:22.425][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:22.426][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:22.427][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:22.428][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:22.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:22.439][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-04-05 16:02:22.441][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:22.442][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:22.443][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-04-05 16:02:22.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-04-05 16:02:23.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:23.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-04-05 16:02:23.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-04-05 16:02:23.149][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-04-05 16:02:23.150][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:23.151][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:23.152][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:23.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:23.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:23.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:23.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:23.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:23.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:23.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:23.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.202][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:23.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:23.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:23.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:23.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:23.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.222][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:23.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:23.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:23.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:23.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:23.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:23.278][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-04-05 16:02:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:23.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:23.295][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-04-05 16:02:23.296][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:23.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-04-05 16:02:23.298][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:23.299][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:23.299][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:23.300][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:23.301][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:23.302][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:23.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:23.311][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-04-05 16:02:23.313][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:23.314][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:23.315][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-04-05 16:02:23.663][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-04-05 16:02:24.024][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:24.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-04-05 16:02:24.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-04-05 16:02:24.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-04-05 16:02:24.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:24.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:24.033][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:24.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:24.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.075][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.087][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.093][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:24.134][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-04-05 16:02:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:24.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:24.152][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-04-05 16:02:24.153][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:24.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-04-05 16:02:24.155][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:24.156][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:24.156][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:24.157][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:24.158][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:24.159][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:24.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:24.169][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-04-05 16:02:24.171][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:24.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:24.173][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-04-05 16:02:24.523][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-04-05 16:02:24.874][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:24.876][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-04-05 16:02:24.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-04-05 16:02:24.881][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-04-05 16:02:24.882][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:24.883][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:24.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:24.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:24.894][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.900][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.906][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.927][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.945][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:24.991][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-04-05 16:02:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:25.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.008][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-04-05 16:02:25.009][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:25.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-04-05 16:02:25.011][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:25.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:25.012][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:25.013][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:25.014][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:25.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:25.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2025-04-05 16:02:25.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:25.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:25.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2025-04-05 16:02:25.396][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2025-04-05 16:02:25.749][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:25.751][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2025-04-05 16:02:25.754][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2025-04-05 16:02:25.755][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2025-04-05 16:02:25.757][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:25.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:25.758][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:25.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:25.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:25.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:25.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:25.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:25.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:25.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:25.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:25.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.802][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:25.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:25.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:25.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:25.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:25.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:25.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:25.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:25.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:25.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:25.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:25.860][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-04-05 16:02:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:25.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.877][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-04-05 16:02:25.878][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:25.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-04-05 16:02:25.880][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:25.881][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:25.882][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:25.882][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:25.883][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:25.884][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:25.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.894][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2025-04-05 16:02:25.896][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:25.897][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:25.898][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2025-04-05 16:02:26.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2025-04-05 16:02:26.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:26.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2025-04-05 16:02:26.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2025-04-05 16:02:26.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2025-04-05 16:02:26.594][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:26.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:26.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:26.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:26.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:26.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:26.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:26.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:26.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:26.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:26.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:26.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:26.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.647][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:26.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:26.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:26.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:26.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:26.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:26.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:26.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.705][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-04-05 16:02:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:26.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:26.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:26.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:26.735][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:26.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:27.152][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:27.153][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:27.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:27.505][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:27.857][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:27.859][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2025-04-05 16:02:27.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2025-04-05 16:02:27.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:27.867][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:27.867][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:27.869][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:28.217][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:28.573][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:28.574][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2025-04-05 16:02:28.577][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2025-04-05 16:02:28.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:28.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:28.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:28.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:28.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:28.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:28.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:28.587][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-04-05 16:02:28.588][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:28.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-04-05 16:02:28.590][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:28.591][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:28.591][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:28.592][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:28.593][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:28.593][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:28.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:28.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:28.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:28.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:28.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:28.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:28.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:28.603][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2025-04-05 16:02:28.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:28.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:28.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2025-04-05 16:02:28.952][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2025-04-05 16:02:29.312][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:29.313][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2025-04-05 16:02:29.316][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2025-04-05 16:02:29.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2025-04-05 16:02:29.319][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:29.320][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:29.321][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:29.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:29.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.336][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:29.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:29.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:29.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:29.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:29.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:29.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.365][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:29.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.377][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:29.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:29.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:29.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.383][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:29.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:29.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:29.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:29.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:29.423][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-04-05 16:02:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:29.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:29.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:29.457][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-04-05 16:02:29.458][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:29.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-04-05 16:02:29.460][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:29.461][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:29.462][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:29.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:29.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:29.464][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:29.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:29.474][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2025-04-05 16:02:29.476][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:29.477][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:29.478][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2025-04-05 16:02:29.833][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2025-04-05 16:02:30.184][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:30.185][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2025-04-05 16:02:30.188][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2025-04-05 16:02:30.190][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2025-04-05 16:02:30.191][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:30.192][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:30.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:30.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.209][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:30.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:30.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.215][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:30.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:30.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:30.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:30.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:30.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:30.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.236][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:30.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:30.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:30.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:30.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:30.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:30.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.301][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-04-05 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.326][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:30.328][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:30.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:30.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:30.331][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:30.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:30.705][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:30.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:30.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:30.708][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:30.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:31.093][biodb::testThat]
biodb.INFO [2025-04-05 16:02:31.094][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-05 16:02:31.094][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:31.095][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:31.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:31.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:02:31.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:31.155][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:02:31.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.176][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:31.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:02:31.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:31.178][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:02:31.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.215][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:31.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.231][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:02:31.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.274][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.287][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:31.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.312][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.329][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:02:31.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:31.339][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:31.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:31.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.353][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:31.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:31.355][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:31.707][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:32.061][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:32.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-04-05 16:02:32.065][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-04-05 16:02:32.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.076][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-04-05 16:02:32.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:32.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-04-05 16:02:32.078][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:32.079][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:32.080][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:32.080][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:32.081][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:32.082][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:32.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.092][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-04-05 16:02:32.094][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:32.095][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:32.096][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-04-05 16:02:32.454][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-04-05 16:02:32.800][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:32.802][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-04-05 16:02:32.804][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-04-05 16:02:32.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-04-05 16:02:32.807][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:32.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:32.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:32.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:32.819][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.825][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:32.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:32.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:32.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:32.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:32.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:32.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:32.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:32.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:32.850][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:32.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.852][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:32.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:32.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:32.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.870][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:32.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:32.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:32.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:32.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:32.911][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-04-05 16:02:32.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:32.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.928][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-04-05 16:02:32.929][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:32.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-04-05 16:02:32.931][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:32.932][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:32.933][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:32.933][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:32.934][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:32.935][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:32.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.945][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-04-05 16:02:32.947][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:32.948][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:32.949][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-04-05 16:02:33.309][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-04-05 16:02:33.661][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:33.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-04-05 16:02:33.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-04-05 16:02:33.667][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-04-05 16:02:33.669][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:33.669][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:33.670][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:33.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:33.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:33.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:33.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:33.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:33.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:33.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:33.681][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:33.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:33.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:33.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:33.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:33.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:33.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:33.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.725][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:33.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:33.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:33.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:33.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:33.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:33.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:33.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:33.782][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-04-05 16:02:33.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:33.792][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:33.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:33.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:33.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:34.145][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:34.506][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:34.507][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-04-05 16:02:34.510][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-04-05 16:02:34.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:34.521][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-04-05 16:02:34.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:34.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-04-05 16:02:34.524][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:34.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:34.525][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:34.526][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:34.527][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:34.527][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:34.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:34.537][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-04-05 16:02:34.539][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:34.540][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:34.541][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-04-05 16:02:34.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-04-05 16:02:35.338][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:35.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-04-05 16:02:35.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-04-05 16:02:35.344][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-04-05 16:02:35.345][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:35.346][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:35.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:35.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:35.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:35.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:35.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:35.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:35.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:35.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:35.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.394][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:35.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.406][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:35.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:35.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:35.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:35.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:35.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:35.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:35.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:35.453][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-04-05 16:02:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:35.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:35.471][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-04-05 16:02:35.472][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:35.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-04-05 16:02:35.483][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:35.484][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:35.485][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:35.485][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:35.486][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:35.487][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:35.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:35.497][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-04-05 16:02:35.499][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:35.499][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:35.500][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-04-05 16:02:35.888][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-04-05 16:02:36.254][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:36.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-04-05 16:02:36.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-04-05 16:02:36.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-04-05 16:02:36.262][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:36.263][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:36.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:36.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:36.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:36.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.287][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:36.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:36.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:36.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.305][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.306][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.311][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:36.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:36.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:36.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.329][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:36.330][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:36.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:36.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:36.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:36.371][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-04-05 16:02:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:36.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.389][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-04-05 16:02:36.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:36.391][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-04-05 16:02:36.392][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:36.393][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:36.394][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:36.395][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:36.395][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:36.396][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:36.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.406][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-04-05 16:02:36.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:36.409][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:36.410][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-04-05 16:02:36.765][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-04-05 16:02:37.117][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:37.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-04-05 16:02:37.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-04-05 16:02:37.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-04-05 16:02:37.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:37.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:37.126][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:37.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:37.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:37.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:37.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:37.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:37.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:37.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:37.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.168][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:37.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:37.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:37.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:37.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:37.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:37.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:37.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:37.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:37.236][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-04-05 16:02:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:37.260][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:37.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.290][private$selectFields]
biodb.TRACE[2025-04-05 16:02:37.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:37.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:37.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.299][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.302][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:37.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.327][private$selectFields]
biodb.TRACE[2025-04-05 16:02:37.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:37.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:37.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.339][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:37.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.364][private$selectFields]
biodb.TRACE[2025-04-05 16:02:37.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:37.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:37.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:37.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:37.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:37.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:37.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:37.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:37.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:37.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:37.749][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:38.095][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:38.097][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-04-05 16:02:38.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-04-05 16:02:38.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:38.110][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-04-05 16:02:38.111][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:38.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-04-05 16:02:38.113][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:38.114][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:38.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:38.115][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:38.116][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:38.117][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:38.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:38.127][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-04-05 16:02:38.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:38.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:38.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-04-05 16:02:38.487][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-04-05 16:02:38.871][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:38.873][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-04-05 16:02:38.876][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-04-05 16:02:38.878][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-04-05 16:02:38.879][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:38.880][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:38.881][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:38.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.905][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:38.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:38.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:38.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.911][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:38.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:38.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:38.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:38.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:38.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:38.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:38.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:38.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:38.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:38.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:38.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:38.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:38.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:38.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:38.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.947][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:38.948][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:38.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:38.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:38.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.987][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-04-05 16:02:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.004][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-04-05 16:02:39.005][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:39.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-04-05 16:02:39.007][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:39.008][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:39.008][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:39.009][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:39.010][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:39.011][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:39.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.021][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-04-05 16:02:39.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:39.023][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:39.024][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-04-05 16:02:39.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-04-05 16:02:39.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:39.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-04-05 16:02:39.744][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-04-05 16:02:39.746][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-04-05 16:02:39.747][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:39.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:39.749][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:39.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:39.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.765][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:39.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:39.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:39.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:39.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:39.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:39.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:39.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:39.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:39.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.791][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:39.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:39.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:39.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:39.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.803][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:39.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:39.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:39.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:39.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:39.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:39.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:39.848][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-04-05 16:02:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:39.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.872][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-04-05 16:02:39.872][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:39.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-04-05 16:02:39.874][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:39.875][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:39.876][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:39.877][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:39.877][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:39.878][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:39.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.888][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-04-05 16:02:39.889][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:39.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:39.891][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-04-05 16:02:40.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-04-05 16:02:40.597][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:40.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-04-05 16:02:40.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-04-05 16:02:40.603][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-04-05 16:02:40.604][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:40.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:40.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:40.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:40.616][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.622][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:40.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:40.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:40.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.645][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.646][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.648][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:40.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:40.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:40.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:40.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:40.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:40.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:40.706][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-04-05 16:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:40.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:40.724][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-04-05 16:02:40.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:40.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-04-05 16:02:40.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:40.727][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:40.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:40.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:40.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:40.731][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:40.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:40.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-04-05 16:02:40.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:40.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:40.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-04-05 16:02:41.095][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-04-05 16:02:41.444][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:41.446][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-04-05 16:02:41.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-04-05 16:02:41.451][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-04-05 16:02:41.452][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:41.453][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:41.453][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:41.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:41.464][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:41.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:41.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:41.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:41.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.497][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:41.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:41.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:41.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.514][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:41.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:41.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:41.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:41.562][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-04-05 16:02:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:41.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:41.579][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-04-05 16:02:41.580][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:41.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-04-05 16:02:41.582][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:41.583][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:41.584][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:41.584][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:41.585][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:41.586][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:41.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:41.596][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-04-05 16:02:41.598][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:41.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:41.600][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-04-05 16:02:41.957][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-04-05 16:02:42.306][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:42.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-04-05 16:02:42.310][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-04-05 16:02:42.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-04-05 16:02:42.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:42.314][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:42.315][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:42.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.332][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:42.332][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:42.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:42.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:42.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:42.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:42.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.359][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:42.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.371][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:42.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:42.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:42.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:42.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.420][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-04-05 16:02:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:42.438][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-04-05 16:02:42.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:42.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-04-05 16:02:42.441][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:42.442][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:42.443][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:42.443][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:42.444][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:42.445][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:42.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:42.455][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-04-05 16:02:42.457][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:42.458][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:42.459][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-04-05 16:02:42.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-04-05 16:02:43.162][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:43.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-04-05 16:02:43.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-04-05 16:02:43.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-04-05 16:02:43.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:43.170][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:43.171][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:43.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:43.181][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.187][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:43.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:43.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:43.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:43.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:43.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:43.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:43.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:43.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:43.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:43.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.222][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:43.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:43.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:43.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:43.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:43.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:43.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:43.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:43.279][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-04-05 16:02:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:43.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:43.296][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-04-05 16:02:43.297][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:43.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-04-05 16:02:43.299][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:43.300][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:43.300][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:43.301][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:43.302][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:43.303][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:43.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:43.313][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-04-05 16:02:43.315][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:43.316][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:43.317][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-04-05 16:02:43.670][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-04-05 16:02:44.016][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:44.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-04-05 16:02:44.021][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-04-05 16:02:44.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-04-05 16:02:44.024][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:44.025][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:44.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:44.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:44.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.042][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.068][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.086][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.126][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-04-05 16:02:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:44.144][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-04-05 16:02:44.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:44.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-04-05 16:02:44.147][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:44.147][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:44.148][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:44.149][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:44.156][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:44.157][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:44.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:44.166][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-04-05 16:02:44.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:44.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:44.170][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-04-05 16:02:44.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-04-05 16:02:44.874][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:44.875][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-04-05 16:02:44.878][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-04-05 16:02:44.880][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-04-05 16:02:44.881][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:44.882][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:44.882][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:44.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:44.892][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.898][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.904][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.924][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.942][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.983][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-04-05 16:02:44.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:44.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:44.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:44.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:45.352][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:45.699][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:45.700][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-04-05 16:02:45.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-04-05 16:02:45.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:45.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:45.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:45.731][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-04-05 16:02:45.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:45.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-04-05 16:02:45.734][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:45.735][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:45.736][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:45.736][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:45.737][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:45.738][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:45.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:45.748][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-04-05 16:02:45.750][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:45.751][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:45.752][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-04-05 16:02:46.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-04-05 16:02:46.466][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:46.468][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-04-05 16:02:46.471][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-04-05 16:02:46.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-04-05 16:02:46.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:46.475][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:46.475][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:46.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:46.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.492][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:46.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:46.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:46.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:46.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:46.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:46.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:46.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:46.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.518][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:46.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:46.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:46.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:46.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:46.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:46.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:46.586][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-04-05 16:02:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:46.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:46.603][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-04-05 16:02:46.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:46.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-04-05 16:02:46.606][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:46.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:46.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:46.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:46.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:46.609][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:46.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:46.619][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-04-05 16:02:46.621][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:46.622][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:46.623][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-04-05 16:02:46.976][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-04-05 16:02:47.325][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:47.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-04-05 16:02:47.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-04-05 16:02:47.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-04-05 16:02:47.332][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:47.333][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:47.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:47.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:47.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.350][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:47.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:47.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.356][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:47.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:47.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:47.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:47.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:47.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.374][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:47.375][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.377][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:47.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:47.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:47.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:47.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:47.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:47.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:47.436][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-04-05 16:02:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:47.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:47.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.463][private$selectFields]
biodb.TRACE[2025-04-05 16:02:47.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:47.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:47.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.472][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:02:47.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.509][private$selectFields]
biodb.TRACE[2025-04-05 16:02:47.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:47.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:47.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.531][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:02:47.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.546][private$selectFields]
biodb.TRACE[2025-04-05 16:02:47.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:47.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:47.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.555][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:47.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:02:47.568][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:47.569][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:47.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:47.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:47.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:47.661][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:47.663][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:48.010][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:48.389][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:48.391][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2025-04-05 16:02:48.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2025-04-05 16:02:48.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:48.399][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:48.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:48.401][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:48.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:49.098][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:49.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2025-04-05 16:02:49.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2025-04-05 16:02:49.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:49.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:49.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:49.156][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:49.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.187][private$selectFields]
biodb.TRACE[2025-04-05 16:02:49.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:49.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:49.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.199][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:02:49.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.246][private$selectFields]
biodb.TRACE[2025-04-05 16:02:49.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:49.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:49.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.262][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.265][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:49.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:49.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.291][private$selectFields]
biodb.TRACE[2025-04-05 16:02:49.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:49.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:49.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:49.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:02:49.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:49.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:49.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:49.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:49.328][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:49.329][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:49.330][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:49.675][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:50.024][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:50.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-04-05 16:02:50.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-04-05 16:02:50.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:50.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.056][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-04-05 16:02:50.057][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:50.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-04-05 16:02:50.059][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:50.060][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:50.060][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:50.061][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:50.062][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:50.063][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:50.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.073][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-04-05 16:02:50.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:50.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:50.077][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-04-05 16:02:50.430][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-04-05 16:02:50.785][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:50.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-04-05 16:02:50.790][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-04-05 16:02:50.792][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-04-05 16:02:50.793][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:50.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:50.794][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:50.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:50.805][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.811][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:50.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:50.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.817][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:50.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:50.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:50.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:50.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:50.845][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:50.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:50.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:50.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:50.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:50.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:50.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.864][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:50.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:50.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:50.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:50.903][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-04-05 16:02:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:50.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.921][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-04-05 16:02:50.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:50.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-04-05 16:02:50.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:50.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:50.925][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:50.926][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:50.927][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:50.927][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:50.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.938][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-04-05 16:02:50.940][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:50.940][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:50.941][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-04-05 16:02:51.296][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-04-05 16:02:51.670][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:51.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-04-05 16:02:51.675][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-04-05 16:02:51.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-04-05 16:02:51.678][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:51.679][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:51.680][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:51.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:51.690][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.696][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:51.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:51.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:51.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:51.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:51.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:51.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:51.720][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:51.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.722][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:51.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:51.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:51.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.740][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:51.741][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:51.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:51.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:51.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:51.780][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-04-05 16:02:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:51.790][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:51.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.806][private$selectFields]
biodb.TRACE[2025-04-05 16:02:51.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:51.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:51.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:51.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.851][private$selectFields]
biodb.TRACE[2025-04-05 16:02:51.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:51.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:51.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.860][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.863][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:02:51.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.888][private$selectFields]
biodb.TRACE[2025-04-05 16:02:51.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:51.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:51.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.897][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:51.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:02:51.911][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:51.912][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:51.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:51.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:51.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:51.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:51.927][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:52.279][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:52.705][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:52.707][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-04-05 16:02:52.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-04-05 16:02:52.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:52.721][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-04-05 16:02:52.722][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:52.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-04-05 16:02:52.724][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:52.724][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:52.725][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:52.726][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:52.727][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:52.728][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:52.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:52.738][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-04-05 16:02:52.740][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:52.741][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:52.742][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-04-05 16:02:53.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-04-05 16:02:53.452][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:53.454][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-04-05 16:02:53.457][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-04-05 16:02:53.459][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-04-05 16:02:53.460][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:53.461][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:53.461][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:53.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.472][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.478][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:53.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.484][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:53.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:53.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:53.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:53.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:53.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.507][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:53.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.514][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:53.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:53.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.524][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:53.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:53.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:53.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:53.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:53.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:53.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.574][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-04-05 16:02:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:53.591][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-04-05 16:02:53.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:53.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-04-05 16:02:53.593][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:53.594][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:53.595][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:53.596][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:53.596][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:53.597][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:53.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:53.607][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-04-05 16:02:53.609][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:53.610][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:53.611][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-04-05 16:02:53.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-04-05 16:02:54.325][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:54.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-04-05 16:02:54.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-04-05 16:02:54.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-04-05 16:02:54.332][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:54.333][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:54.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:54.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.350][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:54.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:54.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.356][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:54.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:54.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:54.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:54.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:54.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:54.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:54.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:54.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.376][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:54.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.388][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:54.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:54.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.394][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:54.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:54.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:54.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:54.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.434][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-04-05 16:02:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:54.452][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-04-05 16:02:54.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:54.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-04-05 16:02:54.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:54.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:54.456][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:54.457][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:54.457][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:54.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:54.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:54.469][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-04-05 16:02:54.471][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:54.471][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:54.472][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-04-05 16:02:54.825][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-04-05 16:02:55.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:55.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-04-05 16:02:55.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-04-05 16:02:55.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-04-05 16:02:55.182][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:55.183][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:55.184][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:55.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.200][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:55.201][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:55.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:55.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:55.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:55.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:55.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:55.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:55.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:55.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:55.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.228][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:55.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:55.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:55.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.256][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:55.257][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:55.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:55.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:55.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:55.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.296][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-04-05 16:02:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:55.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.322][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.335][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:02:55.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.360][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:02:55.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.399][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.408][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:02:55.422][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:55.423][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:55.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:55.443][biodb::testThat]
biodb.INFO [2025-04-05 16:02:55.443][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-05 16:02:55.444][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:55.445][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.453][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:55.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.505][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:55.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:02:55.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:55.508][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:02:55.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.532][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:55.535][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:02:55.536][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:55.537][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:02:55.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.573][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:55.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.589][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.598][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:02:55.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.628][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.638][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.641][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:55.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.667][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.677][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.681][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:02:55.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:55.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:55.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:55.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:55.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:02:55.708][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:55.709][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:02:55.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:55.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:02:55.750][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:55.751][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:02:55.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.808][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:55.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.824][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.832][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.836][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:55.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.861][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.873][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:55.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.899][private$selectFields]
biodb.TRACE[2025-04-05 16:02:55.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:55.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:55.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.908][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:55.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.912][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:55.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:55.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.921][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:55.922][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:55.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:55.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:55.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.937][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:55.938][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:02:55.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:55.940][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:02:55.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:55.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:55.997][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:55.998][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:55.999][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:56.355][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:56.880][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:56.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-04-05 16:02:56.885][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-04-05 16:02:56.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:56.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:56.915][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-04-05 16:02:56.915][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:56.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-04-05 16:02:56.918][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:56.918][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:56.919][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:56.920][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:56.921][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:56.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:56.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:56.932][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-04-05 16:02:56.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:56.943][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:56.944][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-04-05 16:02:57.290][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-04-05 16:02:57.647][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:57.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-04-05 16:02:57.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-04-05 16:02:57.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-04-05 16:02:57.655][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:57.655][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:57.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:57.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:57.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:57.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:57.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.678][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:57.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:57.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:57.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:57.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.696][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.701][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:57.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:57.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:57.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:57.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:57.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:57.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:57.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:57.760][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-04-05 16:02:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:57.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:57.778][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-04-05 16:02:57.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:57.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-04-05 16:02:57.780][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:57.781][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:57.782][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:57.783][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:57.783][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:57.784][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:57.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:57.794][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-04-05 16:02:57.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:57.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:57.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-04-05 16:02:58.160][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-04-05 16:02:58.514][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:58.516][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-04-05 16:02:58.519][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-04-05 16:02:58.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-04-05 16:02:58.522][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:58.523][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:58.524][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:58.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:58.534][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.540][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:58.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:58.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:58.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:58.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:58.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:58.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.565][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.566][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:58.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:58.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:58.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.590][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:58.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:58.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:58.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:58.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:58.640][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-04-05 16:02:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:58.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:58.658][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-04-05 16:02:58.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:58.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-04-05 16:02:58.661][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:58.662][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:58.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:58.663][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:58.664][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:58.665][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:58.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:58.675][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-04-05 16:02:58.677][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:58.678][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:58.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-04-05 16:02:59.036][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-04-05 16:02:59.386][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:59.388][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-04-05 16:02:59.390][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-04-05 16:02:59.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-04-05 16:02:59.393][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:59.394][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:59.395][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:59.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.411][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:59.412][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:59.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:59.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:59.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:59.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:59.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:59.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.440][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:59.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.452][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:59.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.458][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:59.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:59.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:59.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:59.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:59.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.497][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-04-05 16:02:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:59.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.523][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:02:59.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.561][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-04-05 16:02:59.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.605][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.614][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-04-05 16:02:59.627][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:59.628][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:59.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:59.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:59.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:02:59.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:59.684][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:02:59.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:59.689][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:59.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:02:59.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:59.692][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:02:59.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.745][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:59.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.761][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.770][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.774][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:02:59.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.800][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.809][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.812][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:59.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.838][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.853][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:02:59.867][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:59.867][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:59.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:59.878][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:59.881][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:59.882][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:59.883][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:00.232][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:00.584][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:00.586][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-04-05 16:03:00.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-04-05 16:03:00.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:00.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:00.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:00.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:00.635][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-04-05 16:03:00.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:00.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-04-05 16:03:00.638][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:00.639][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:00.640][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:00.640][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:00.641][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:00.642][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:00.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:00.653][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-04-05 16:03:00.655][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:00.655][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:00.656][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-04-05 16:03:01.019][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-04-05 16:03:01.374][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:01.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-04-05 16:03:01.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-04-05 16:03:01.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-04-05 16:03:01.381][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:01.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:01.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:01.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.400][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:01.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:01.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.406][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:01.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:01.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:01.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:01.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.430][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:01.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:01.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:01.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.449][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:01.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:01.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:01.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:01.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:01.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.491][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-04-05 16:03:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.501][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:01.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.517][private$selectFields]
biodb.TRACE[2025-04-05 16:03:01.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:01.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:01.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.530][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:01.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.564][private$selectFields]
biodb.TRACE[2025-04-05 16:03:01.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:01.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:01.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:01.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.602][private$selectFields]
biodb.TRACE[2025-04-05 16:03:01.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:01.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:01.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.610][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:01.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.624][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-04-05 16:03:01.624][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:01.625][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:01.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:01.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:01.639][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:01.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:03:01.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:01.642][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:03:01.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:01.705][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-04-05 16:03:01.705][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:01.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-04-05 16:03:01.708][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:01.708][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:01.709][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:01.710][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:01.711][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:01.711][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:01.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:01.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-04-05 16:03:01.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:01.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:01.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-04-05 16:03:02.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-04-05 16:03:02.436][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:02.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-04-05 16:03:02.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-04-05 16:03:02.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-04-05 16:03:02.444][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:02.445][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:02.446][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:02.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:02.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:02.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:02.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:02.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:02.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:02.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:02.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:02.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:02.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.491][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:02.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.504][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:02.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:02.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.510][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:02.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:02.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:02.526][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:02.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:02.559][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-04-05 16:03:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:02.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.604][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-04-05 16:03:02.605][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:02.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-04-05 16:03:02.607][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:02.608][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:02.608][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:02.609][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:02.610][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:02.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:02.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-04-05 16:03:02.622][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:02.623][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:02.624][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-04-05 16:03:02.985][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-04-05 16:03:03.337][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:03.338][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-04-05 16:03:03.341][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-04-05 16:03:03.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-04-05 16:03:03.344][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:03.345][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:03.346][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:03.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:03.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.363][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:03.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:03.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:03.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:03.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:03.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:03.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:03.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.390][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:03.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.402][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:03.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:03.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.408][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:03.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:03.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:03.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:03.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:03.449][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-04-05 16:03:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:03.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:03.467][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-04-05 16:03:03.468][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:03.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-04-05 16:03:03.470][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:03.471][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:03.471][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:03.472][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:03.473][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:03.474][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:03.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:03.484][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-04-05 16:03:03.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:03.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:03.488][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-04-05 16:03:03.851][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-04-05 16:03:04.278][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:04.279][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-04-05 16:03:04.282][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-04-05 16:03:04.284][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-04-05 16:03:04.285][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:04.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:04.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:04.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:04.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:04.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:04.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:04.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:04.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:04.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:04.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:04.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:04.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:04.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:04.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:04.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:04.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:04.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:04.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:04.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:04.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.343][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:04.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:04.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:04.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:04.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:04.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:04.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:04.367][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:04.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:04.401][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-04-05 16:03:04.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:04.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:04.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:04.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:04.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:04.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:04.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:04.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:04.419][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-04-05 16:03:04.420][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:04.421][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-04-05 16:03:04.422][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:04.423][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:04.424][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:04.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:04.425][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:04.426][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:04.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:04.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:04.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:04.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:04.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:04.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:04.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:04.436][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-04-05 16:03:04.438][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:04.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:04.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-04-05 16:03:04.798][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-04-05 16:03:05.150][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:05.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-04-05 16:03:05.154][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-04-05 16:03:05.156][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-04-05 16:03:05.157][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:05.158][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:05.159][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:05.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:05.169][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.175][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:05.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:05.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.181][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:05.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:05.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:05.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:05.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:05.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:05.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:05.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.203][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:05.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:05.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:05.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:05.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:05.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:05.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:05.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:05.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.262][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-04-05 16:03:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:05.288][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-04-05 16:03:05.289][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:05.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-04-05 16:03:05.291][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:05.292][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:05.293][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:05.294][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:05.294][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:05.295][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:05.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:05.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-04-05 16:03:05.307][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:05.308][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:05.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-04-05 16:03:05.665][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-04-05 16:03:06.017][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:06.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-04-05 16:03:06.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-04-05 16:03:06.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-04-05 16:03:06.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:06.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:06.027][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:06.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:06.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.070][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.082][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.088][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.094][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:06.130][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-04-05 16:03:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:06.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:06.149][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-04-05 16:03:06.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:06.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-04-05 16:03:06.152][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:06.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:06.153][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:06.154][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:06.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:06.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:06.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:06.167][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-04-05 16:03:06.169][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:06.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:06.171][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-04-05 16:03:06.527][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-04-05 16:03:06.876][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:06.878][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-04-05 16:03:06.881][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-04-05 16:03:06.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-04-05 16:03:06.884][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:06.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:06.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:06.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:06.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.927][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.948][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:06.998][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-04-05 16:03:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:07.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:07.015][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-04-05 16:03:07.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:07.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-04-05 16:03:07.018][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:07.019][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:07.020][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:07.020][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:07.021][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:07.022][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:07.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:07.032][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-04-05 16:03:07.034][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:07.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:07.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-04-05 16:03:07.394][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-04-05 16:03:07.746][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:07.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-04-05 16:03:07.750][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-04-05 16:03:07.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-04-05 16:03:07.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:07.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:07.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:07.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:07.766][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:07.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:07.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:07.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:07.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:07.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:07.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:07.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:07.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:07.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:07.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:07.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:07.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:07.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.799][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:07.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:07.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:07.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:07.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:07.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.818][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:07.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:07.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:07.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:07.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:07.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:07.860][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-04-05 16:03:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:07.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:07.869][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:07.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:07.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.886][private$selectFields]
biodb.TRACE[2025-04-05 16:03:07.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:07.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:07.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.899][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:03:07.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:07.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.924][private$selectFields]
biodb.TRACE[2025-04-05 16:03:07.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:07.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:07.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-04-05 16:03:07.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.970][private$selectFields]
biodb.TRACE[2025-04-05 16:03:07.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:07.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:07.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-04-05 16:03:07.993][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:07.994][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:03:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.006][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:03:08.012][biodb::testThat]
biodb.INFO [2025-04-05 16:03:08.013][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-05 16:03:08.014][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:03:08.015][biodb::testThat]
biodb.TRACE[2025-04-05 16:03:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:08.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:03:08.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.078][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:03:08.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.101][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:03:08.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.104][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:03:08.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:08.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.157][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.166][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.179][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:03:08.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.196][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.211][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.214][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:08.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.240][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.252][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:03:08.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:08.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:08.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.276][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:03:08.278][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.279][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:03:08.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:03:08.320][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.321][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:03:08.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.375][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:08.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.391][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.401][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:08.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.430][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.440][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.443][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:08.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.470][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.484][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.497][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:08.497][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:08.498][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:08.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:03:08.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.514][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:03:08.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.652][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.655][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.656][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:03:08.657][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.658][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:03:08.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.712][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:08.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.728][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:08.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.772][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.784][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:08.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.809][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.822][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:08.832][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:08.833][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:03:08.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.898][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:03:08.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.903][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:03:08.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:08.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:08.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:03:08.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:08.910][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:03:08.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.969][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:08.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.985][private$selectFields]
biodb.TRACE[2025-04-05 16:03:08.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:08.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:08.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.995][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:08.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.998][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:08.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:03:09.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.029][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:09.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.066][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:03:09.089][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:09.090][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:09.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:09.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:09.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:09.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:03:09.105][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:09.106][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:03:09.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:09.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.176][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:09.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.214][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.237][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:03:09.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.253][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.262][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.266][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:03:09.307][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:09.307][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:09.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:09.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:09.320][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:09.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:03:09.322][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:09.323][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:03:09.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.376][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:09.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.392][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.406][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:03:09.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.432][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:03:09.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.473][private$selectFields]
biodb.TRACE[2025-04-05 16:03:09.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:09.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:09.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:09.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:09.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.497][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:03:09.497][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:09.498][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:03:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:03:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.528][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:09.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:09.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.533][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:03:09.534][biodb::testThat]
biodb.INFO [2025-04-05 16:03:09.535][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-05 16:03:09.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:03:09.537][biodb::testThat]
biodb.TRACE[2025-04-05 16:03:09.539][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:03:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:09.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:09.601][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:09.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:09.603][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:09.973][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:10.502][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:10.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-04-05 16:03:10.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-04-05 16:03:10.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:10.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:10.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:10.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:10.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:10.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:10.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:10.519][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-04-05 16:03:10.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:10.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-04-05 16:03:10.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:10.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:10.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:10.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:10.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:10.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:10.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:10.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:10.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:10.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:10.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:10.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:10.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:10.537][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-04-05 16:03:10.539][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:10.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:10.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-04-05 16:03:10.898][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-04-05 16:03:11.251][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:11.252][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-04-05 16:03:11.255][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-04-05 16:03:11.257][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-04-05 16:03:11.258][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:11.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:11.260][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:11.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:11.271][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:11.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:11.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:11.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:11.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:11.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:11.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.308][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:11.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:11.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:11.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:11.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:11.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:11.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:11.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:11.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:11.369][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-04-05 16:03:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:11.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:11.388][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-04-05 16:03:11.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:11.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-04-05 16:03:11.391][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:11.391][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:11.392][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:11.393][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:11.394][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:11.394][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:11.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:11.405][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-04-05 16:03:11.407][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:11.408][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:11.409][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-04-05 16:03:11.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-04-05 16:03:12.143][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:12.145][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-04-05 16:03:12.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-04-05 16:03:12.149][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-04-05 16:03:12.150][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:12.151][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:12.152][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:12.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:12.163][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.169][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:12.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:12.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:12.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:12.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:12.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:12.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:12.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:12.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:12.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.211][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:12.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:12.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:12.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:12.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:12.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:12.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:12.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:12.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:12.269][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-04-05 16:03:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:12.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:12.287][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-04-05 16:03:12.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:12.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-04-05 16:03:12.290][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:12.291][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:12.292][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:12.292][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:12.293][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:12.294][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:12.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:12.304][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-04-05 16:03:12.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:12.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:12.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-04-05 16:03:12.666][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-04-05 16:03:13.031][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:13.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-04-05 16:03:13.035][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-04-05 16:03:13.037][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-04-05 16:03:13.038][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:13.039][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:13.040][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:13.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.057][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.063][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.069][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.070][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.084][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.144][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-04-05 16:03:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:13.162][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-04-05 16:03:13.163][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:13.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-04-05 16:03:13.165][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:13.166][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:13.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:13.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:13.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:13.173][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:13.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:13.186][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-04-05 16:03:13.188][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:13.189][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:13.189][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-04-05 16:03:13.541][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-04-05 16:03:13.888][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:13.890][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-04-05 16:03:13.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-04-05 16:03:13.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-04-05 16:03:13.896][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:13.896][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:13.897][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:13.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.914][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.919][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.940][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.964][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.965][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.000][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-04-05 16:03:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.010][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:14.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.026][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:03:14.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.065][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-05 16:03:14.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.103][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-05 16:03:14.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:14.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:14.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:14.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:14.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:14.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:14.150][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:14.502][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:14.860][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:14.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-04-05 16:03:14.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-04-05 16:03:14.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:14.875][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-04-05 16:03:14.876][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:14.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-04-05 16:03:14.878][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:14.878][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:14.879][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:14.880][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:14.881][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:14.881][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:14.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:14.891][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-04-05 16:03:14.893][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:14.894][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:14.895][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-04-05 16:03:15.249][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-04-05 16:03:15.598][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:15.600][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-04-05 16:03:15.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-04-05 16:03:15.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-04-05 16:03:15.606][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:15.606][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:15.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:15.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:15.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.623][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:15.624][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.629][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:15.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:15.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:15.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:15.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:15.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:15.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.648][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:15.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:15.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.651][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:15.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:15.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:15.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:15.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:15.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:15.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:15.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:15.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:15.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:15.709][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-04-05 16:03:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:15.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:15.727][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-04-05 16:03:15.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:15.729][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-04-05 16:03:15.730][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:15.731][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:15.732][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:15.733][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:15.733][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:15.734][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:15.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:15.745][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-04-05 16:03:15.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:15.747][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:15.748][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-04-05 16:03:16.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-04-05 16:03:16.469][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:16.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-04-05 16:03:16.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-04-05 16:03:16.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-04-05 16:03:16.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:16.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:16.478][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:16.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:16.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.494][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:16.495][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:16.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:16.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:16.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:16.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:16.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:16.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:16.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.551][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:16.552][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:16.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:16.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:16.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:16.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:16.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:16.591][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-04-05 16:03:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:16.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:16.609][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-04-05 16:03:16.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:16.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-04-05 16:03:16.611][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:16.612][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:16.613][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:16.614][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:16.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:16.615][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:16.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:16.626][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-04-05 16:03:16.628][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:16.629][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:16.630][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-04-05 16:03:16.980][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-04-05 16:03:17.327][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:17.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-04-05 16:03:17.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-04-05 16:03:17.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-04-05 16:03:17.335][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:17.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:17.336][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:17.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:17.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:17.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:17.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.359][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:17.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:17.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:17.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:17.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:17.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:17.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.380][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.391][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.404][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:17.439][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-04-05 16:03:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:17.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:17.457][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-04-05 16:03:17.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:17.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-04-05 16:03:17.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:17.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:17.461][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:17.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:17.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:17.464][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:17.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:17.474][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-04-05 16:03:17.476][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:17.477][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:17.478][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-04-05 16:03:17.824][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-04-05 16:03:18.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:18.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-04-05 16:03:18.184][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-04-05 16:03:18.191][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-04-05 16:03:18.193][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:18.194][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:18.194][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:18.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:18.205][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.210][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:18.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:18.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:18.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.217][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:18.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:18.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:18.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:18.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:18.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:18.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:18.235][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:18.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.237][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:18.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:18.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:18.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:18.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:18.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.255][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:18.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:18.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:18.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:18.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:18.297][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-04-05 16:03:18.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:18.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:18.315][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-04-05 16:03:18.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:18.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-04-05 16:03:18.318][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:18.319][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:18.320][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:18.320][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:18.321][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:18.322][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:18.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:18.333][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-04-05 16:03:18.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:18.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:18.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-04-05 16:03:18.696][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-04-05 16:03:19.046][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:19.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-04-05 16:03:19.050][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-04-05 16:03:19.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-04-05 16:03:19.053][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:19.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:19.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:19.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.066][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.072][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:19.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:19.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:19.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:19.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:19.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:19.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:19.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.102][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:19.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.105][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:19.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:19.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:19.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:19.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:19.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:19.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:19.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:19.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:19.169][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-04-05 16:03:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:19.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:19.187][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-04-05 16:03:19.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:19.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-04-05 16:03:19.190][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:19.191][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:19.191][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:19.192][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:19.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:19.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:19.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:19.204][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-04-05 16:03:19.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:19.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:19.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-04-05 16:03:19.563][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-04-05 16:03:19.916][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:19.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-04-05 16:03:19.920][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-04-05 16:03:19.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-04-05 16:03:19.923][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:19.924][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:19.925][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:19.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.935][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:19.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:19.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:19.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:19.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:19.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:19.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.968][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:19.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:19.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.981][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:19.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.987][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:19.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:19.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:19.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.032][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-04-05 16:03:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:20.050][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-04-05 16:03:20.051][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:20.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-04-05 16:03:20.053][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:20.054][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:20.055][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:20.056][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:20.056][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:20.057][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:20.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:20.068][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-04-05 16:03:20.070][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:20.071][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:20.072][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-04-05 16:03:20.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-04-05 16:03:20.792][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:20.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-04-05 16:03:20.796][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-04-05 16:03:20.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-04-05 16:03:20.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:20.800][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:20.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:20.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:20.811][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.817][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:20.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:20.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:20.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:20.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.829][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:20.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:20.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:20.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:20.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:20.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.874][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:20.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:20.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.880][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:20.881][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:20.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.913][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-04-05 16:03:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.922][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:20.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.938][private$selectFields]
biodb.TRACE[2025-04-05 16:03:20.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:20.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:20.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.950][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:20.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-05 16:03:20.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:20.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.976][private$selectFields]
biodb.TRACE[2025-04-05 16:03:20.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:20.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:20.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:20.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-05 16:03:20.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:21.013][private$selectFields]
biodb.TRACE[2025-04-05 16:03:21.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:21.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:21.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:21.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:21.022][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:21.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.025][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:21.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-05 16:03:21.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:21.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:21.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:21.050][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:21.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:21.052][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:21.397][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:21.741][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:21.743][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-04-05 16:03:21.746][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-04-05 16:03:21.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.756][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-04-05 16:03:21.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:21.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-04-05 16:03:21.759][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:21.760][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:21.761][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:21.761][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:21.762][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:21.763][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:21.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.773][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-04-05 16:03:21.775][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:21.776][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:21.777][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-04-05 16:03:22.148][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-04-05 16:03:22.495][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:22.497][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-04-05 16:03:22.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-04-05 16:03:22.502][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-04-05 16:03:22.503][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:22.504][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:22.505][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:22.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:22.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:22.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:22.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:22.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:22.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:22.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:22.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:22.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:22.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.558][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:22.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:22.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:22.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.576][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:22.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:22.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:22.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:22.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:22.618][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-04-05 16:03:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:22.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:22.636][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-04-05 16:03:22.637][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:22.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-04-05 16:03:22.639][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:22.640][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:22.641][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:22.642][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:22.642][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:22.643][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:22.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:22.653][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-04-05 16:03:22.655][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:22.656][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:22.657][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-04-05 16:03:23.010][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-04-05 16:03:23.355][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:23.357][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-04-05 16:03:23.360][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-04-05 16:03:23.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-04-05 16:03:23.363][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:23.364][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:23.365][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:23.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:23.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:23.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:23.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:23.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:23.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:23.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:23.376][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.382][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:23.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:23.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:23.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:23.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:23.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:23.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.410][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:23.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:23.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:23.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:23.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:23.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:23.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:23.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:23.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:23.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:23.470][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-04-05 16:03:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:23.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:23.490][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:23.491][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:23.492][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:23.850][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:24.197][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:24.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-04-05 16:03:24.202][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-04-05 16:03:24.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:24.212][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-04-05 16:03:24.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:24.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-04-05 16:03:24.215][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:24.216][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:24.216][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:24.217][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:24.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:24.219][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:24.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:24.229][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-04-05 16:03:24.231][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:24.231][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:24.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-04-05 16:03:24.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-04-05 16:03:24.967][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:24.969][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-04-05 16:03:24.972][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-04-05 16:03:24.974][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-04-05 16:03:24.975][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:24.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:24.976][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:24.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:24.987][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.993][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:24.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:24.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.999][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.021][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.024][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.042][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.048][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.082][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-04-05 16:03:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.100][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-04-05 16:03:25.101][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:25.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-04-05 16:03:25.103][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:25.104][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:25.105][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:25.106][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:25.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:25.107][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:25.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-04-05 16:03:25.120][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:25.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:25.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-04-05 16:03:25.477][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-04-05 16:03:25.833][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:25.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-04-05 16:03:25.837][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-04-05 16:03:25.839][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-04-05 16:03:25.841][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:25.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:25.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:25.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:25.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:25.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:25.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.902][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.920][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.960][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-04-05 16:03:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.980][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-04-05 16:03:25.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:25.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-04-05 16:03:25.983][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:25.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:25.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:25.985][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:25.986][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:25.987][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:25.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-04-05 16:03:25.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:26.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:26.001][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-04-05 16:03:26.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-04-05 16:03:26.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:26.711][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-04-05 16:03:26.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-04-05 16:03:26.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-04-05 16:03:26.718][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:26.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:26.719][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:26.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:26.730][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:26.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:26.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:26.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:26.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:26.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:26.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:26.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:26.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:26.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.763][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:26.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:26.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:26.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:26.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.785][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:26.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:26.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:26.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:26.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:26.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:26.833][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-04-05 16:03:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:26.843][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:26.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.860][private$selectFields]
biodb.TRACE[2025-04-05 16:03:26.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:26.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:26.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.881][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-05 16:03:26.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:26.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.906][private$selectFields]
biodb.TRACE[2025-04-05 16:03:26.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:26.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:26.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-05 16:03:26.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.944][private$selectFields]
biodb.TRACE[2025-04-05 16:03:26.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:26.946][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:26.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:26.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.958][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-05 16:03:26.968][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:26.969][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:26.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:26.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:03:27.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.003][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:03:27.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.026][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:03:27.027][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.028][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:03:27.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.064][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:27.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.081][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.094][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:03:27.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.119][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.121][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:27.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.164][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:03:27.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:27.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:27.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:27.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:03:27.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:03:27.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:03:27.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.245][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:03:27.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.299][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:27.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.314][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:27.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.353][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:27.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.391][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.400][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.404][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:27.420][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:27.420][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:27.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:27.431][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:03:27.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.437][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:03:27.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.625][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:27.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:03:27.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:27.628][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:03:27.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.686][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:27.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.702][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.712][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:27.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.747][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.759][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:27.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.784][private$selectFields]
biodb.TRACE[2025-04-05 16:03:27.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:27.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:27.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:27.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:27.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:27.807][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:27.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:27.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:27.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:27.838][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:27.839][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:28.185][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:28.531][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:28.533][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-04-05 16:03:28.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-04-05 16:03:28.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:28.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:28.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:28.580][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-04-05 16:03:28.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:28.582][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-04-05 16:03:28.583][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:28.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:28.584][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:28.585][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:28.586][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:28.586][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:28.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:28.597][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-04-05 16:03:28.599][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:28.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:28.600][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-04-05 16:03:28.969][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-04-05 16:03:29.330][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:29.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-04-05 16:03:29.335][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-04-05 16:03:29.337][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-04-05 16:03:29.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:29.339][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:29.340][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:29.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:29.350][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.356][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:29.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.362][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:29.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:29.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:29.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:29.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:29.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:29.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.386][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:29.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:29.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:29.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.404][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:29.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:29.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:29.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:29.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:29.454][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-04-05 16:03:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:29.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:29.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:29.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:29.488][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-04-05 16:03:29.489][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:29.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-04-05 16:03:29.491][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:29.492][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:29.493][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:29.493][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:29.494][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:29.495][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:29.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:29.505][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-04-05 16:03:29.507][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:29.508][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:29.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-04-05 16:03:29.882][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-04-05 16:03:30.237][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:30.239][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-04-05 16:03:30.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-04-05 16:03:30.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-04-05 16:03:30.245][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:30.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:30.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:30.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.263][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:30.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:30.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:30.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:30.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:30.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:30.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:30.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:30.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.290][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:30.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:30.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:30.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:30.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:30.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:30.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:30.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:30.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.350][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-04-05 16:03:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:30.369][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-04-05 16:03:30.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:30.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-04-05 16:03:30.371][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:30.372][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:30.373][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:30.374][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:30.375][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:30.375][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:30.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:30.386][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-04-05 16:03:30.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:30.389][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:30.390][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-04-05 16:03:30.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-04-05 16:03:31.095][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:31.097][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-04-05 16:03:31.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-04-05 16:03:31.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-04-05 16:03:31.103][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:31.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:31.114][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:31.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:31.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:31.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.137][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:31.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:31.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:31.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:31.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:31.149][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:31.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.151][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:31.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:31.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:31.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:31.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:31.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:31.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:31.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:31.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:31.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:31.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:31.211][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-04-05 16:03:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:31.221][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:31.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.237][private$selectFields]
biodb.TRACE[2025-04-05 16:03:31.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:31.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:31.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.246][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.250][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:31.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.276][private$selectFields]
biodb.TRACE[2025-04-05 16:03:31.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:31.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:31.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.285][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-05 16:03:31.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.315][private$selectFields]
biodb.TRACE[2025-04-05 16:03:31.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:31.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:31.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:31.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-05 16:03:31.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:31.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:31.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:31.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:31.354][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:31.354][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:31.356][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:31.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:32.223][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:32.225][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-04-05 16:03:32.228][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-04-05 16:03:32.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:32.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:32.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:32.291][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:32.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.307][private$selectFields]
biodb.TRACE[2025-04-05 16:03:32.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:32.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:32.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.317][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:32.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.347][private$selectFields]
biodb.TRACE[2025-04-05 16:03:32.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:32.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:32.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.356][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.360][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:32.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.385][private$selectFields]
biodb.TRACE[2025-04-05 16:03:32.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:32.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:32.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:32.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:32.411][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:32.411][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:32.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:32.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:32.425][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:32.426][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:32.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:33.178][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:33.535][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:33.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-04-05 16:03:33.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-04-05 16:03:33.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:33.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:33.574][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-04-05 16:03:33.575][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:33.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-04-05 16:03:33.578][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:33.579][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:33.579][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:33.580][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:33.581][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:33.582][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:33.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:33.594][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-04-05 16:03:33.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:33.597][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:33.599][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-04-05 16:03:33.955][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-04-05 16:03:34.304][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:34.306][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-04-05 16:03:34.309][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-04-05 16:03:34.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-04-05 16:03:34.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:34.313][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:34.314][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:34.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:34.336][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.343][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:34.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:34.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.349][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:34.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:34.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:34.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:34.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:34.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:34.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.370][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:34.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:34.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:34.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:34.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:34.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:34.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:34.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:34.432][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-04-05 16:03:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:34.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:34.451][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-04-05 16:03:34.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:34.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-04-05 16:03:34.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:34.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:34.455][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:34.456][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:34.457][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:34.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:34.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:34.468][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-04-05 16:03:34.470][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:34.471][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:34.472][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-04-05 16:03:34.827][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-04-05 16:03:35.172][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:35.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-04-05 16:03:35.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-04-05 16:03:35.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-04-05 16:03:35.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:35.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:35.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:35.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:35.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.200][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:35.201][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:35.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:35.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.208][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:35.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:35.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:35.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:35.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.231][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:35.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:35.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.244][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:35.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:35.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:35.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:35.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:35.294][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-04-05 16:03:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:35.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:35.321][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-04-05 16:03:35.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:35.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-04-05 16:03:35.324][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:35.325][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:35.325][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:35.326][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:35.327][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:35.328][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:35.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:35.339][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-04-05 16:03:35.341][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:35.342][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:35.343][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-04-05 16:03:35.689][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-04-05 16:03:36.083][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:36.085][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-04-05 16:03:36.088][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-04-05 16:03:36.089][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-04-05 16:03:36.091][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:36.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:36.093][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:36.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:36.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.109][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:36.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:36.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.116][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:36.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:36.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:36.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:36.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:36.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.138][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:36.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:36.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:36.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:36.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:36.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:36.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:36.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:36.202][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-04-05 16:03:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:36.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:36.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:36.239][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-04-05 16:03:36.239][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:36.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-04-05 16:03:36.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:36.242][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:36.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:36.244][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:36.245][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:36.246][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:36.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:36.257][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-04-05 16:03:36.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:36.259][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:36.261][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-04-05 16:03:36.623][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-04-05 16:03:36.978][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:36.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-04-05 16:03:36.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-04-05 16:03:36.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-04-05 16:03:36.986][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:36.987][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:36.988][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:36.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:36.999][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.006][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.031][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.053][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.072][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:37.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:37.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:37.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:37.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.114][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-04-05 16:03:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:37.133][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-04-05 16:03:37.133][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:37.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-04-05 16:03:37.136][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:37.136][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:37.137][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:37.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:37.139][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:37.139][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:37.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:37.150][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-04-05 16:03:37.152][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:37.153][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:37.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-04-05 16:03:37.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-04-05 16:03:37.908][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:37.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-04-05 16:03:37.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-04-05 16:03:37.915][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-04-05 16:03:37.916][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:37.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:37.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:37.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.943][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.965][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.970][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:37.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:38.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.036][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-04-05 16:03:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.055][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-04-05 16:03:38.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:38.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-04-05 16:03:38.058][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:38.059][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:38.060][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:38.061][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:38.062][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:38.063][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:38.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.083][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-04-05 16:03:38.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:38.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:38.088][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-04-05 16:03:38.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-04-05 16:03:38.797][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:38.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-04-05 16:03:38.801][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-04-05 16:03:38.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-04-05 16:03:38.804][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:38.805][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:38.806][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:38.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.816][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:38.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:38.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:38.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:38.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:38.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:38.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:38.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:38.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:38.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.850][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:38.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:38.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:38.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:38.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:38.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:38.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:38.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:38.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:38.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:38.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:38.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.911][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-04-05 16:03:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.929][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-04-05 16:03:38.930][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:38.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-04-05 16:03:38.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:38.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:38.934][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:38.935][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:38.935][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:38.936][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:38.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.947][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-04-05 16:03:38.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:38.949][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:38.951][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-04-05 16:03:39.307][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-04-05 16:03:39.655][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:39.657][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-04-05 16:03:39.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-04-05 16:03:39.662][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-04-05 16:03:39.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:39.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:39.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:39.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.682][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:39.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.689][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:39.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:39.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:39.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:39.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:39.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:39.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:39.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:39.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.711][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:39.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:39.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:39.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:39.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:39.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:39.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:39.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.785][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-04-05 16:03:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:39.803][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-04-05 16:03:39.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:39.805][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-04-05 16:03:39.806][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:39.807][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:39.808][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:39.809][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:39.810][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:39.810][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:39.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:39.821][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-04-05 16:03:39.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:39.824][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:39.825][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-04-05 16:03:40.179][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-04-05 16:03:40.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:40.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-04-05 16:03:40.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-04-05 16:03:40.538][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-04-05 16:03:40.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:40.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:40.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:40.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.552][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.558][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:40.559][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:40.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:40.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:40.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:40.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:40.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.584][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:40.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.602][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:40.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.615][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:40.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:40.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:40.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:40.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:40.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.669][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-04-05 16:03:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:40.687][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-04-05 16:03:40.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:40.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-04-05 16:03:40.690][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:40.691][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:40.692][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:40.693][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:40.694][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:40.694][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:40.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:40.705][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-04-05 16:03:40.707][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:40.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:40.709][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-04-05 16:03:41.073][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-04-05 16:03:41.425][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:41.427][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-04-05 16:03:41.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-04-05 16:03:41.432][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-04-05 16:03:41.433][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:41.434][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:41.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:41.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:41.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:41.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:41.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:41.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:41.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:41.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:41.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.454][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:41.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:41.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:41.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:41.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:41.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:41.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:41.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.494][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:41.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:41.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:41.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:41.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:41.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:41.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:41.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:41.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.519][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:41.520][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:41.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:41.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:41.556][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-04-05 16:03:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:41.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:41.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:41.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:41.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:41.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:41.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:41.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:41.576][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-04-05 16:03:41.577][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:41.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-04-05 16:03:41.579][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:41.580][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:41.581][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:41.582][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:41.582][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:41.583][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:41.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:41.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:41.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:41.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:41.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:41.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:41.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:41.594][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-04-05 16:03:41.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:41.597][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:41.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-04-05 16:03:41.960][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-04-05 16:03:42.317][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:42.319][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-04-05 16:03:42.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-04-05 16:03:42.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-04-05 16:03:42.325][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:42.326][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:42.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:42.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.345][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:42.346][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:42.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.352][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:42.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:42.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:42.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.375][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:42.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:42.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:42.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:42.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:42.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:42.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:42.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.439][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-04-05 16:03:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:42.458][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-04-05 16:03:42.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:42.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-04-05 16:03:42.461][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:42.462][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:42.463][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:42.464][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:42.465][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:42.465][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:42.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:42.476][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-04-05 16:03:42.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:42.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:42.489][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-04-05 16:03:42.844][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-04-05 16:03:43.197][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:43.198][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-04-05 16:03:43.201][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-04-05 16:03:43.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-04-05 16:03:43.204][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:43.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:43.206][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:43.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.223][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:43.224][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:43.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.229][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:43.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:43.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.250][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:43.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.262][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.268][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.311][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-04-05 16:03:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:43.438][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-04-05 16:03:43.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:43.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-04-05 16:03:43.441][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:43.442][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:43.442][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:43.443][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:43.444][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:43.445][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:43.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:43.455][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-04-05 16:03:43.457][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:43.463][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:43.467][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-04-05 16:03:43.821][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-04-05 16:03:44.168][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:44.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-04-05 16:03:44.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-04-05 16:03:44.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-04-05 16:03:44.176][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:44.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:44.178][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:44.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:44.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:44.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:44.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:44.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:44.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:44.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:44.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:44.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:44.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:44.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.223][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:44.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:44.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:44.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:44.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:44.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:44.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:44.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:44.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:44.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:44.285][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-04-05 16:03:44.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:44.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:44.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:44.322][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-04-05 16:03:44.323][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:44.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-04-05 16:03:44.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:44.326][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:44.327][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:44.327][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:44.328][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:44.329][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:44.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:44.340][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-04-05 16:03:44.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:44.343][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:44.344][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-04-05 16:03:44.698][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-04-05 16:03:45.052][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:45.058][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-04-05 16:03:45.061][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-04-05 16:03:45.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-04-05 16:03:45.066][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:45.067][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:45.068][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:45.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:45.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:45.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:45.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:45.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:45.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:45.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:45.082][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.089][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:45.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:45.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:45.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:45.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:45.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.115][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:45.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:45.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.118][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:45.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:45.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:45.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:45.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:45.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:45.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:45.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:45.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:45.192][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-04-05 16:03:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:45.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:45.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:45.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:45.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:45.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:45.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:45.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:45.211][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-04-05 16:03:45.212][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:45.213][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-04-05 16:03:45.214][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:45.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:45.216][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:45.217][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:45.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:45.218][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:45.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:45.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:45.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:45.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:45.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:45.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:45.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:45.230][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-04-05 16:03:45.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:45.233][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:45.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-04-05 16:03:45.591][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-04-05 16:03:47.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:47.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-04-05 16:03:47.349][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-04-05 16:03:47.351][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-04-05 16:03:47.352][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:47.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:47.354][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:47.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.365][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:47.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:47.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:47.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:47.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:47.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.399][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:47.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:47.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:47.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:47.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:47.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:47.458][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-04-05 16:03:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:47.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:47.476][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-04-05 16:03:47.477][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:47.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-04-05 16:03:47.479][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:47.480][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:47.481][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:47.482][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:47.483][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:47.483][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:47.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:47.494][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-04-05 16:03:47.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:47.497][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:47.498][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-04-05 16:03:47.853][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-04-05 16:03:48.201][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:48.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-04-05 16:03:48.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-04-05 16:03:48.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-04-05 16:03:48.209][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:48.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:48.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:48.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:48.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:48.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:48.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:48.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:48.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:48.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:48.222][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.223][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:48.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:48.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:48.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:48.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:48.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:48.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:48.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:48.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.266][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:48.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:48.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:48.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:48.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.284][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:48.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:48.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:48.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:48.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:48.324][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-04-05 16:03:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:48.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:48.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:48.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:48.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:48.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:48.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:48.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:48.343][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-04-05 16:03:48.344][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:48.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-04-05 16:03:48.346][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:48.347][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:48.348][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:48.349][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:48.349][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:48.350][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:48.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:48.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:48.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:48.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:48.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:48.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:48.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:48.361][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-04-05 16:03:48.363][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:48.364][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:48.365][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-04-05 16:03:48.727][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-04-05 16:03:49.076][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:49.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-04-05 16:03:49.081][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-04-05 16:03:49.083][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-04-05 16:03:49.084][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:49.085][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:49.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:49.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:49.097][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.104][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.110][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:49.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.133][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:49.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:49.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:49.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.152][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:49.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:49.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:49.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:49.195][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-04-05 16:03:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:49.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:49.223][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-04-05 16:03:49.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:49.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-04-05 16:03:49.227][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:49.228][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:49.228][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:49.229][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:49.230][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:49.231][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:49.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:49.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-04-05 16:03:49.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:49.245][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:49.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-04-05 16:03:49.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-04-05 16:03:49.953][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:49.955][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-04-05 16:03:49.957][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-04-05 16:03:49.959][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-04-05 16:03:49.961][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:49.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:49.963][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:49.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:49.974][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.980][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.007][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.070][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-04-05 16:03:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:50.088][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-04-05 16:03:50.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:50.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-04-05 16:03:50.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:50.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:50.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:50.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:50.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:50.095][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:50.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:50.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-04-05 16:03:50.108][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:50.109][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:50.110][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-04-05 16:03:50.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-04-05 16:03:50.829][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:50.831][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-04-05 16:03:50.834][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-04-05 16:03:50.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-04-05 16:03:50.837][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:50.838][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:50.839][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:50.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:50.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:50.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:50.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:50.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:50.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:50.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:50.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.884][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.896][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.909][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.954][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-04-05 16:03:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:50.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:50.998][private$selectFields]
biodb.TRACE[2025-04-05 16:03:50.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:50.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.008][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:51.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.038][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.038][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.039][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.047][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:51.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.077][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.086][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:51.101][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:51.102][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:51.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.130][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.132][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-04-05 16:03:51.134][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.135][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-04-05 16:03:51.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.215][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:51.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.231][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:03:51.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.269][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.284][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-05 16:03:51.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.312][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-05 16:03:51.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:51.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:51.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.376][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.379][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.380][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-04-05 16:03:51.381][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.382][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-04-05 16:03:51.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.516][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:51.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.533][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.542][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-05 16:03:51.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.572][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-05 16:03:51.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.612][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.625][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-05 16:03:51.636][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:51.637][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:51.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.648][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-04-05 16:03:51.652][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.653][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-04-05 16:03:51.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-04-05 16:03:51.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.697][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-04-05 16:03:51.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.760][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:51.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.786][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.796][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.800][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-05 16:03:51.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.826][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.836][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.840][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-05 16:03:51.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.867][private$selectFields]
biodb.TRACE[2025-04-05 16:03:51.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:51.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:51.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:51.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.881][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-05 16:03:51.893][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:51.894][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:51.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:03:51.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:03:51.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.953][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:51.956][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:51.957][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:03:51.958][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:51.959][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:03:51.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:51.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.013][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:03:52.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.059][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.082][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:52.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.098][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:03:52.121][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:52.122][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:52.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:52.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.135][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.136][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:03:52.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.138][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:03:52.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.175][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.178][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.179][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:03:52.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.181][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:03:52.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.235][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:52.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.251][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.264][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:52.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.290][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:52.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.336][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.345][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:52.359][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:52.360][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:52.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:52.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.374][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:03:52.375][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.376][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:03:52.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.531][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.534][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.535][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:03:52.536][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.537][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:03:52.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.608][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:52.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.635][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.646][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:52.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.681][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.695][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:52.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.722][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:52.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:52.749][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:52.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:52.789][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.792][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-04-05 16:03:52.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.795][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-04-05 16:03:52.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:52.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.934][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:52.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.973][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.982][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.986][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-05 16:03:52.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.011][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-05 16:03:53.035][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:53.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:53.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:53.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:53.050][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:53.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-04-05 16:03:53.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:53.052][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-04-05 16:03:53.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.109][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:53.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.127][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:53.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.169][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.179][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:53.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.216][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.229][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:53.240][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:53.240][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:53.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:53.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:53.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:53.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-04-05 16:03:53.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:53.257][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-04-05 16:03:53.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.788][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:53.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.805][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.815][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.828][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:53.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.844][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.854][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.858][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:53.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.886][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.896][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.900][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:53.910][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:53.911][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:03:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:53.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:53.990][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:53.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:53.992][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:54.353][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:54.944][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:54.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-04-05 16:03:54.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-04-05 16:03:54.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:54.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:54.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:55.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:55.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:55.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:55.058][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-04-05 16:03:55.059][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:55.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-04-05 16:03:55.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:55.062][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:55.062][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:55.063][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:55.064][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:55.065][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:55.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:55.075][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-04-05 16:03:55.077][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:55.078][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:55.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-04-05 16:03:55.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-04-05 16:03:56.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:56.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-04-05 16:03:56.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-04-05 16:03:56.077][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-04-05 16:03:56.078][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:56.079][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:56.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:56.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:56.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:56.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:56.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:56.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:56.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.140][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:56.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:56.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:56.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:56.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.161][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:56.162][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:56.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:56.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:56.203][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-04-05 16:03:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:56.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:56.222][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-04-05 16:03:56.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:56.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-04-05 16:03:56.224][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:56.225][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:56.226][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:56.227][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:56.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:56.228][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:56.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:56.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-04-05 16:03:56.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:56.242][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:56.243][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-04-05 16:03:56.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-04-05 16:03:56.961][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:56.963][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-04-05 16:03:56.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-04-05 16:03:56.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-04-05 16:03:56.970][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:56.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:56.972][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:56.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:56.984][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.021][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:57.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:57.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:57.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:57.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:57.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:57.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.052][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.055][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.070][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.076][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.077][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:57.113][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-04-05 16:03:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:57.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:57.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.152][private$selectFields]
biodb.TRACE[2025-04-05 16:03:57.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:57.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:57.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:03:57.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.194][private$selectFields]
biodb.TRACE[2025-04-05 16:03:57.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:57.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:57.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.205][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.209][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:57.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.238][private$selectFields]
biodb.TRACE[2025-04-05 16:03:57.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:57.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:57.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:57.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-05 16:03:57.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:57.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:57.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:57.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:57.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:57.277][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:57.278][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:57.641][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:58.359][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:58.361][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-04-05 16:03:58.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-04-05 16:03:58.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:58.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:58.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:58.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:58.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:58.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:58.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:58.387][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-04-05 16:03:58.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:58.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-04-05 16:03:58.390][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:58.391][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:58.392][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:58.393][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:58.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:58.394][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:58.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:58.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:58.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:58.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:58.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:58.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:58.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:58.405][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-04-05 16:03:58.407][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:58.407][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:58.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-04-05 16:03:58.764][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-04-05 16:03:59.123][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:59.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-04-05 16:03:59.127][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-04-05 16:03:59.129][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-04-05 16:03:59.130][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:59.131][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:59.132][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:59.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:59.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:59.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:59.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:59.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:59.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:59.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:59.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:59.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:59.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:59.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:59.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:59.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:59.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:59.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.179][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:59.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.192][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:59.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:59.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:59.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:59.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:59.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:59.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:59.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:59.240][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-04-05 16:03:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:59.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:59.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:59.276][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-04-05 16:03:59.277][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:59.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-04-05 16:03:59.279][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:59.280][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:59.280][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:59.281][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:59.282][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:59.283][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:59.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:59.293][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-04-05 16:03:59.295][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:59.296][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:59.297][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-04-05 16:03:59.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-04-05 16:04:00.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:00.010][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-04-05 16:04:00.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-04-05 16:04:00.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-04-05 16:04:00.028][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:00.030][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:00.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:00.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:00.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:00.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:00.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:00.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:00.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:00.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:00.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:00.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:00.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:00.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:00.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:00.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.092][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:00.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:00.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.096][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:00.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.105][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:00.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:00.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:00.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:00.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:00.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:00.119][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:00.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:00.154][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-04-05 16:04:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:00.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:00.182][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:00.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.200][private$selectFields]
biodb.TRACE[2025-04-05 16:04:00.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:00.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:00.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-05 16:04:00.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.240][private$selectFields]
biodb.TRACE[2025-04-05 16:04:00.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:00.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:00.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.250][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:00.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.281][private$selectFields]
biodb.TRACE[2025-04-05 16:04:00.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:00.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:00.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.291][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:00.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:04:00.305][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:00.306][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:00.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:00.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:00.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:00.321][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:00.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:04:00.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:04:01.019][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:01.021][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-04-05 16:04:01.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-04-05 16:04:01.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:01.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:01.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:01.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:01.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:01.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:01.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:01.036][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-04-05 16:04:01.037][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:01.038][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-04-05 16:04:01.039][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:01.040][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:01.041][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:01.042][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:01.042][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:01.043][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:01.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:01.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:01.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:01.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:01.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:01.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:01.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:01.063][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-04-05 16:04:01.065][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:01.066][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:01.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-04-05 16:04:01.422][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-04-05 16:04:02.012][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:02.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-04-05 16:04:02.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-04-05 16:04:02.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-04-05 16:04:02.019][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:02.020][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:02.021][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:02.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:02.032][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.038][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.039][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.044][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.066][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.085][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.086][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:02.127][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-04-05 16:04:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:02.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:02.145][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-04-05 16:04:02.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:02.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-04-05 16:04:02.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:02.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:02.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:02.150][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:02.151][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:02.152][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:02.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:02.163][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-04-05 16:04:02.165][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:02.165][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:02.167][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-04-05 16:04:02.532][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-04-05 16:04:02.878][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:02.880][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-04-05 16:04:02.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-04-05 16:04:02.885][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-04-05 16:04:02.886][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:02.887][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:02.888][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:02.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:02.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.905][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.912][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.934][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.954][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.955][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.009][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-04-05 16:04:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.028][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-04-05 16:04:03.029][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:03.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-04-05 16:04:03.031][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:03.031][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:03.032][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:03.033][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:03.034][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:03.034][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:03.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.045][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-04-05 16:04:03.047][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:03.048][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:03.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-04-05 16:04:03.406][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-04-05 16:04:03.753][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:03.755][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-04-05 16:04:03.758][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-04-05 16:04:03.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-04-05 16:04:03.761][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:03.762][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:03.763][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:03.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:03.775][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:03.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:03.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:03.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:03.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:03.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:03.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:03.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.811][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:03.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:03.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.825][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:03.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:03.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.831][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:03.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:03.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:03.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:03.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.874][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-04-05 16:04:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.893][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-04-05 16:04:03.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:03.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-04-05 16:04:03.896][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:03.897][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:03.898][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:03.899][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:03.900][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:03.900][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:03.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-04-05 16:04:03.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:03.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:03.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-04-05 16:04:04.289][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-04-05 16:04:04.647][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:04.648][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-04-05 16:04:04.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-04-05 16:04:04.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-04-05 16:04:04.655][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:04.655][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:04.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:04.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:04.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:04.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:04.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:04.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.680][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:04.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:04.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:04.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:04.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:04.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:04.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:04.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:04.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.716][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:04.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:04.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:04.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.723][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:04.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:04.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:04.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:04.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.735][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:04.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:04.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:04.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:04.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:04.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:04.789][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-04-05 16:04:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:04.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:04.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:04.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.835][private$selectFields]
biodb.TRACE[2025-04-05 16:04:04.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:04.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:04.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.844][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.848][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-05 16:04:04.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.874][private$selectFields]
biodb.TRACE[2025-04-05 16:04:04.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:04.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:04.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.884][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.888][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-05 16:04:04.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.914][private$selectFields]
biodb.TRACE[2025-04-05 16:04:04.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:04.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:04.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.924][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:04.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.928][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-05 16:04:04.939][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:04.939][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:04.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:04.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:04.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:04.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:04.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:04.979][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:04.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:04.984][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:04.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:04.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:04.987][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:04.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:05.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.059][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:05.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.099][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.109][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.112][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:05.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.139][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:05.164][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:05.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:05.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:05.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:05.179][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:05.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:05.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:05.183][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:05.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.240][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:05.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.264][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.273][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:05.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.303][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:05.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.342][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:05.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:05.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:05.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:05.378][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:05.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:05.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:05.382][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:05.383][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:05.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.437][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:05.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.454][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.463][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.467][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:05.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.492][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:04:05.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.537][private$selectFields]
biodb.TRACE[2025-04-05 16:04:05.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:05.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:05.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:05.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.549][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:05.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:04:05.559][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:05.560][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:05.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:05.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:05.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:05.590][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:05.591][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:04:05.997][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:04:06.353][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:06.355][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-04-05 16:04:06.358][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-04-05 16:04:06.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:06.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:06.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:06.406][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-04-05 16:04:06.407][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:06.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-04-05 16:04:06.409][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:06.410][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:06.410][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:06.411][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:06.412][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:06.413][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:06.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:06.423][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-04-05 16:04:06.425][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:06.426][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:06.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-04-05 16:04:06.796][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-04-05 16:04:07.155][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:07.156][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-04-05 16:04:07.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-04-05 16:04:07.162][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-04-05 16:04:07.164][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:07.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:07.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:07.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:07.178][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.185][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:07.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:07.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.216][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:07.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:07.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:07.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:07.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:07.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:07.289][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-04-05 16:04:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:07.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:07.307][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-04-05 16:04:07.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:07.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-04-05 16:04:07.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:07.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:07.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:07.313][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:07.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:07.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:07.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:07.325][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-04-05 16:04:07.327][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:07.327][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:07.328][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-04-05 16:04:07.687][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-04-05 16:04:08.040][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:08.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-04-05 16:04:08.045][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-04-05 16:04:08.047][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-04-05 16:04:08.048][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:08.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:08.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:08.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:08.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.068][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.068][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:08.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:08.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.100][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.119][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:08.162][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-04-05 16:04:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:08.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:08.181][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-04-05 16:04:08.182][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:08.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-04-05 16:04:08.185][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:08.185][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:08.186][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:08.187][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:08.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:08.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:08.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:08.200][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-04-05 16:04:08.202][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:08.203][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:08.204][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-04-05 16:04:08.549][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-04-05 16:04:08.908][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:08.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-04-05 16:04:08.913][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-04-05 16:04:08.915][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-04-05 16:04:08.916][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:08.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:08.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:08.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:08.929][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.935][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.941][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:08.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.976][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.979][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.988][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.034][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-04-05 16:04:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.052][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-04-05 16:04:09.053][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:09.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-04-05 16:04:09.055][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:09.056][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:09.057][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:09.058][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:09.059][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:09.059][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:09.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.070][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-04-05 16:04:09.072][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:09.073][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:09.074][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-04-05 16:04:09.421][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-04-05 16:04:09.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:09.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-04-05 16:04:09.780][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-04-05 16:04:09.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-04-05 16:04:09.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:09.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:09.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:09.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:09.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:09.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:09.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:09.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:09.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:09.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:09.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:09.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:09.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.835][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:09.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:09.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:09.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:09.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:09.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.854][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:09.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:09.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.897][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-04-05 16:04:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.916][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-04-05 16:04:09.917][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:09.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-04-05 16:04:09.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:09.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:09.930][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:09.931][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:09.931][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:09.932][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:09.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.943][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-04-05 16:04:09.945][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:09.946][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:09.947][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-04-05 16:04:10.305][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-04-05 16:04:10.657][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:10.659][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-04-05 16:04:10.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-04-05 16:04:10.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-04-05 16:04:10.665][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:10.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:10.667][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:10.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:10.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:10.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.689][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:10.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:10.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:10.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:10.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:10.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:10.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.711][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:10.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:10.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:10.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:10.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:10.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:10.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.743][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:10.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:10.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:10.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:10.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:10.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:10.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:10.788][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-04-05 16:04:10.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:10.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:10.817][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:10.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.834][private$selectFields]
biodb.TRACE[2025-04-05 16:04:10.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:10.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:10.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:10.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.873][private$selectFields]
biodb.TRACE[2025-04-05 16:04:10.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:10.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:10.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.883][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:10.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.897][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:10.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.923][private$selectFields]
biodb.TRACE[2025-04-05 16:04:10.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:10.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:10.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:10.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:10.947][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:10.948][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:10.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:10.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:10.961][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:10.962][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:10.964][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:04:11.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:04:12.000][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:12.002][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-04-05 16:04:12.005][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-04-05 16:04:12.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:12.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:12.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:12.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:12.055][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-04-05 16:04:12.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:12.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-04-05 16:04:12.058][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:12.059][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:12.060][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:12.060][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:12.061][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:12.062][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:12.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:12.073][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-04-05 16:04:12.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:12.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:12.077][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-04-05 16:04:12.796][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-04-05 16:04:13.145][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:13.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-04-05 16:04:13.150][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-04-05 16:04:13.152][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-04-05 16:04:13.154][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:13.155][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:13.156][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:13.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:13.167][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:13.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:13.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:13.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:13.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:13.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:13.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:13.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:13.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:13.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.201][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:13.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:13.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:13.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:13.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:13.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:13.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:13.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:13.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:13.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:13.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:13.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:13.264][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-04-05 16:04:13.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:13.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:13.283][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-04-05 16:04:13.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:13.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-04-05 16:04:13.298][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:13.299][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:13.300][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:13.301][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:13.302][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:13.303][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:13.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:13.314][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-04-05 16:04:13.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:13.316][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:13.318][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-04-05 16:04:13.666][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-04-05 16:04:14.028][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:14.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-04-05 16:04:14.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-04-05 16:04:14.034][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-04-05 16:04:14.036][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:14.037][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:14.037][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:14.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:14.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.096][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:14.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:14.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.108][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:14.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:14.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:14.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:14.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:14.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:14.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:14.159][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-04-05 16:04:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:14.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:14.177][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-04-05 16:04:14.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:14.179][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-04-05 16:04:14.180][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:14.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:14.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:14.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:14.183][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:14.184][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:14.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:14.195][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-04-05 16:04:14.197][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:14.198][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:14.199][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-04-05 16:04:14.585][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-04-05 16:04:14.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:14.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-04-05 16:04:14.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-04-05 16:04:14.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-04-05 16:04:14.951][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:14.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:14.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:14.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:14.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.976][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.998][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:14.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:14.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.004][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.010][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.017][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.070][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-04-05 16:04:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.088][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-04-05 16:04:15.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:15.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-04-05 16:04:15.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:15.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:15.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:15.093][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:15.094][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:15.095][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:15.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.105][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-04-05 16:04:15.107][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:15.108][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:15.109][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-04-05 16:04:15.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-04-05 16:04:15.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:15.818][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-04-05 16:04:15.820][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-04-05 16:04:15.822][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-04-05 16:04:15.824][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:15.825][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:15.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:15.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:15.836][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.842][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:15.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:15.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:15.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:15.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:15.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:15.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:15.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:15.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.861][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.867][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:15.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:15.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.870][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:15.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:15.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:15.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:15.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.929][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-04-05 16:04:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.947][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-04-05 16:04:15.947][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:15.948][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-04-05 16:04:15.949][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:15.950][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:15.951][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:15.952][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:15.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:15.953][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:15.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.964][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-04-05 16:04:15.966][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:15.967][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:15.968][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-04-05 16:04:16.321][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-04-05 16:04:16.673][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:16.674][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-04-05 16:04:16.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-04-05 16:04:16.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-04-05 16:04:16.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:16.681][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:16.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:16.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:16.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.711][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:16.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:16.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.717][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:16.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:16.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:16.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:16.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:16.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:16.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:16.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:16.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.739][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:16.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:16.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:16.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:16.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:16.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:16.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:16.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:16.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:16.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:16.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:16.817][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-04-05 16:04:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:16.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:16.836][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-04-05 16:04:16.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:16.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-04-05 16:04:16.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:16.839][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:16.840][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:16.841][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:16.842][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:16.843][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:16.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:16.853][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-04-05 16:04:16.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:16.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:16.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-04-05 16:04:17.214][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-04-05 16:04:17.822][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:17.823][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-04-05 16:04:17.826][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-04-05 16:04:17.829][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-04-05 16:04:17.830][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:17.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:17.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:17.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:17.843][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.850][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:17.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:17.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.856][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:17.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:17.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:17.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.875][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:17.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:17.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.878][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:17.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:17.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.890][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:17.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.897][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:17.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:17.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:17.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:17.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:17.939][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-04-05 16:04:17.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:17.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:17.980][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-04-05 16:04:17.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:17.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-04-05 16:04:17.983][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:17.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:17.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:17.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:17.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:17.987][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:17.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:17.998][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-04-05 16:04:18.000][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:18.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:18.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-04-05 16:04:18.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-04-05 16:04:18.709][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:18.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-04-05 16:04:18.713][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-04-05 16:04:18.715][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-04-05 16:04:18.716][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:18.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:18.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:18.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:18.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.735][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:18.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:18.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:18.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:18.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:18.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:18.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:18.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:18.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:18.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.763][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:18.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.776][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:18.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:18.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:18.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:18.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:18.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:18.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:18.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:18.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:18.823][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-04-05 16:04:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:18.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:18.842][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-04-05 16:04:18.843][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:18.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-04-05 16:04:18.845][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:18.846][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:18.847][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:18.847][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:18.848][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:18.849][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:18.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:18.859][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-04-05 16:04:18.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:18.862][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:18.863][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-04-05 16:04:19.217][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-04-05 16:04:19.569][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:19.571][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-04-05 16:04:19.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-04-05 16:04:19.575][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-04-05 16:04:19.577][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:19.578][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:19.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:19.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:19.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.596][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:19.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:19.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:19.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.602][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:19.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:19.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:19.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:19.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:19.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.624][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:19.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:19.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.627][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.648][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:19.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:19.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:19.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:19.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:19.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:19.696][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-04-05 16:04:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:19.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:19.715][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-04-05 16:04:19.716][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:19.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-04-05 16:04:19.718][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:19.719][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:19.720][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:19.720][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:19.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:19.722][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:19.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:19.733][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-04-05 16:04:19.735][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:19.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:19.737][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-04-05 16:04:20.081][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-04-05 16:04:20.436][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:20.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-04-05 16:04:20.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-04-05 16:04:20.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-04-05 16:04:20.445][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:20.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:20.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:20.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:20.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.465][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:20.466][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:20.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:20.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:20.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:20.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:20.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.484][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:20.484][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:20.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.487][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:20.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:20.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:20.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:20.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:20.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.506][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:20.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:20.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:20.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:20.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:20.549][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-04-05 16:04:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:20.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:20.583][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-04-05 16:04:20.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:20.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-04-05 16:04:20.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:20.587][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:20.587][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:20.588][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:20.589][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:20.590][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:20.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:20.601][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-04-05 16:04:20.603][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:20.604][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:20.605][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-04-05 16:04:20.950][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-04-05 16:04:21.295][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:21.297][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-04-05 16:04:21.299][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-04-05 16:04:21.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-04-05 16:04:21.314][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:21.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:21.316][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:21.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:21.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:21.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:21.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:21.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:21.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:21.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:21.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:21.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:21.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.355][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:21.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:21.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.361][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:21.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:21.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.373][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:21.374][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:21.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:21.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:21.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:21.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:21.415][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-04-05 16:04:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:21.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:21.434][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-04-05 16:04:21.435][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:21.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-04-05 16:04:21.437][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:21.438][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:21.439][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:21.439][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:21.440][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:21.441][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:21.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:21.452][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-04-05 16:04:21.454][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:21.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:21.456][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-04-05 16:04:21.814][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-04-05 16:04:22.169][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:22.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-04-05 16:04:22.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-04-05 16:04:22.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-04-05 16:04:22.176][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:22.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:22.178][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:22.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:22.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:22.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:22.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:22.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:22.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:22.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:22.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:22.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:22.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.223][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:22.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:22.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:22.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:22.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:22.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:22.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:22.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:22.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:22.292][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-04-05 16:04:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:22.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:22.310][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-04-05 16:04:22.311][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:22.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-04-05 16:04:22.313][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:22.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:22.314][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:22.315][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:22.316][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:22.317][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:22.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:22.327][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-04-05 16:04:22.329][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:22.330][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:22.331][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-04-05 16:04:22.688][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-04-05 16:04:23.044][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:23.046][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-04-05 16:04:23.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-04-05 16:04:23.051][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-04-05 16:04:23.052][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:23.053][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:23.054][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:23.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:23.064][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.077][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.101][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:23.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:23.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:23.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:23.165][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-04-05 16:04:23.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:23.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:23.184][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-04-05 16:04:23.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:23.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-04-05 16:04:23.187][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:23.188][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:23.200][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:23.201][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:23.202][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:23.203][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:23.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:23.218][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-04-05 16:04:23.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:23.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:23.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-04-05 16:04:23.568][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-04-05 16:04:23.916][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:23.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-04-05 16:04:23.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-04-05 16:04:23.923][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-04-05 16:04:23.924][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:23.925][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:23.926][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:23.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:23.936][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.943][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.949][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.961][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.982][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.983][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.995][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.043][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-04-05 16:04:24.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.061][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-04-05 16:04:24.062][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:24.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-04-05 16:04:24.064][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:24.065][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:24.066][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:24.067][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:24.068][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:24.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:24.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.079][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-04-05 16:04:24.081][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:24.082][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:24.083][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-04-05 16:04:24.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-04-05 16:04:24.800][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:24.802][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-04-05 16:04:24.805][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-04-05 16:04:24.807][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-04-05 16:04:24.808][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:24.809][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:24.810][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:24.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:24.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.827][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:24.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:24.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.833][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:24.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:24.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:24.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:24.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:24.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:24.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.851][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.854][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:24.855][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:24.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:24.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.866][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:24.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:24.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.873][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.914][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-04-05 16:04:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.932][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-04-05 16:04:24.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:24.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-04-05 16:04:24.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:24.935][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:24.936][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:24.937][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:24.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:24.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:24.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.964][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-04-05 16:04:24.966][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:24.966][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:24.967][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-04-05 16:04:25.320][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-04-05 16:04:25.671][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:25.673][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-04-05 16:04:25.675][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-04-05 16:04:25.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-04-05 16:04:25.679][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:25.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:25.681][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:25.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.692][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.698][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:25.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:25.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:25.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:25.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:25.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:25.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:25.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:25.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.726][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:25.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:25.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.739][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:25.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:25.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:25.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:25.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:25.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:25.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:25.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:25.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:25.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.789][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-04-05 16:04:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:25.808][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-04-05 16:04:25.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:25.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-04-05 16:04:25.811][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:25.812][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:25.813][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:25.814][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:25.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:25.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:25.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:25.826][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-04-05 16:04:25.828][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:25.829][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:25.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-04-05 16:04:26.190][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-04-05 16:04:26.551][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:26.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-04-05 16:04:26.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-04-05 16:04:26.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-04-05 16:04:26.559][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:26.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:26.561][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:26.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.573][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.579][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:26.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:26.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:26.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:26.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:26.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:26.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:26.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:26.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:26.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:26.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.608][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:26.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:26.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:26.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:26.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:26.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:26.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:26.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:26.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:26.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:26.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:26.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.682][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-04-05 16:04:26.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:26.701][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-04-05 16:04:26.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:26.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-04-05 16:04:26.704][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:26.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:26.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:26.706][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:26.707][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:26.708][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:26.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:26.719][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-04-05 16:04:26.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:26.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:26.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-04-05 16:04:27.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-04-05 16:04:27.438][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:27.439][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-04-05 16:04:27.442][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-04-05 16:04:27.444][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-04-05 16:04:27.445][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:27.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:27.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:27.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:27.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:27.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:27.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:27.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:27.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:27.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:27.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:27.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:27.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:27.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:27.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.492][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:27.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:27.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:27.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:27.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.510][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:27.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:27.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:27.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:27.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.551][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-04-05 16:04:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.569][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-04-05 16:04:27.569][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:27.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-04-05 16:04:27.572][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:27.572][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:27.573][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:27.574][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:27.575][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:27.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:27.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.586][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-04-05 16:04:27.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:27.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:27.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-04-05 16:04:27.975][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-04-05 16:04:28.405][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:28.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-04-05 16:04:28.410][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-04-05 16:04:28.412][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-04-05 16:04:28.413][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:28.415][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:28.415][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:28.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:28.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:28.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:28.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:28.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:28.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:28.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:28.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:28.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:28.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.477][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:28.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:28.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:28.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:28.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:28.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:28.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.496][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:28.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:28.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:28.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:28.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:28.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.536][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-04-05 16:04:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:28.554][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-04-05 16:04:28.555][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:28.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-04-05 16:04:28.557][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:28.558][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:28.559][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:28.560][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:28.561][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:28.561][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:28.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:28.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-04-05 16:04:28.574][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:28.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:28.576][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-04-05 16:04:28.947][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-04-05 16:04:29.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:29.457][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-04-05 16:04:29.460][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-04-05 16:04:29.463][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-04-05 16:04:29.464][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:29.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:29.467][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:29.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.486][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.487][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.493][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.517][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:29.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.530][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.537][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:29.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.580][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-04-05 16:04:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:29.609][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-04-05 16:04:29.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:29.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-04-05 16:04:29.612][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:29.613][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:29.614][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:29.615][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:29.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:29.616][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:29.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:29.627][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-04-05 16:04:29.630][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:29.630][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:29.631][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-04-05 16:04:29.991][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-04-05 16:04:30.341][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:30.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-04-05 16:04:30.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-04-05 16:04:30.348][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-04-05 16:04:30.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:30.350][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:30.351][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:30.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.363][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.370][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.385][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.391][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.392][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.401][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:30.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.421][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:30.422][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.466][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-04-05 16:04:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:30.504][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-04-05 16:04:30.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:30.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-04-05 16:04:30.507][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:30.507][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:30.508][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:30.509][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:30.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:30.511][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:30.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:30.523][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-04-05 16:04:30.525][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:30.526][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:30.527][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-04-05 16:04:30.880][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-04-05 16:04:31.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:31.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-04-05 16:04:31.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-04-05 16:04:31.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-04-05 16:04:31.244][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:31.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:31.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:31.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.264][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.291][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:31.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.315][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:31.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.361][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-04-05 16:04:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:31.379][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-04-05 16:04:31.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:31.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-04-05 16:04:31.382][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:31.383][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:31.383][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:31.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:31.385][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:31.386][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:31.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:31.396][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-04-05 16:04:31.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:31.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:31.400][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-04-05 16:04:31.745][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-04-05 16:04:32.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:32.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-04-05 16:04:32.101][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-04-05 16:04:32.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-04-05 16:04:32.104][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:32.105][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:32.106][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:32.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:32.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.125][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.126][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.154][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:32.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:32.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:32.219][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-04-05 16:04:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:32.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:32.239][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-04-05 16:04:32.239][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:32.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-04-05 16:04:32.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:32.242][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:32.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:32.244][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:32.245][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:32.246][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:32.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:32.258][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-04-05 16:04:32.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:32.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:32.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-04-05 16:04:32.614][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-04-05 16:04:32.965][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:32.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-04-05 16:04:32.969][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-04-05 16:04:32.972][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-04-05 16:04:32.973][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:32.974][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:32.975][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:32.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:32.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.005][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.031][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.034][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:33.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.047][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:33.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.098][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-04-05 16:04:33.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:33.118][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-04-05 16:04:33.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:33.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-04-05 16:04:33.121][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:33.122][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:33.123][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:33.123][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:33.124][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:33.125][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:33.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:33.137][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-04-05 16:04:33.139][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:33.140][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:33.141][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-04-05 16:04:33.494][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-04-05 16:04:33.850][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:33.852][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-04-05 16:04:33.855][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-04-05 16:04:33.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-04-05 16:04:33.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:33.860][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:33.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:33.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.909][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:33.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.929][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:33.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.982][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-04-05 16:04:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:34.001][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-04-05 16:04:34.002][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:34.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-04-05 16:04:34.004][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:34.005][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:34.006][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:34.007][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:34.008][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:34.008][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:34.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:34.019][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-04-05 16:04:34.021][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:34.022][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:34.023][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-04-05 16:04:34.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-04-05 16:04:34.743][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:34.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-04-05 16:04:34.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-04-05 16:04:34.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-04-05 16:04:34.750][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:34.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:34.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:34.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.769][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.770][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.798][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.803][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:34.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.816][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.822][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:34.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.864][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-04-05 16:04:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:34.885][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-04-05 16:04:34.886][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:34.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-04-05 16:04:34.888][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:34.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:34.890][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:34.891][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:34.891][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:34.892][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:34.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:34.903][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-04-05 16:04:34.905][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:34.905][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:34.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-04-05 16:04:35.264][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-04-05 16:04:35.798][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:35.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-04-05 16:04:35.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-04-05 16:04:35.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-04-05 16:04:35.808][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:35.809][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:35.810][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:35.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.823][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.829][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.830][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.837][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.858][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.888][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:35.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.908][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:35.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.953][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-04-05 16:04:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.002][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:36.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.019][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:36.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.062][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.076][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:36.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.104][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:36.129][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:36.130][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:36.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:36.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:36.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:36.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:36.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:36.147][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:36.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:36.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.252][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.263][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.266][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.277][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:36.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.295][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.296][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.297][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.306][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:36.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.338][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.348][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:36.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:36.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:36.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:36.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:36.395][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:36.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:36.397][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:36.398][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:36.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.581][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:36.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.605][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:36.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.653][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:36.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.703][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-05 16:04:36.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:36.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:36.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:36.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:36.749][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:36.751][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-04-05 16:04:36.752][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:36.753][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-04-05 16:04:36.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:36.853][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:36.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.874][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.893][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-05 16:04:36.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.924][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.935][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:36.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.968][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:36.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:04:36.995][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:36.995][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:36.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-04-05 16:04:37.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.014][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-04-05 16:04:37.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:37.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.143][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.157][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-05 16:04:37.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.183][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.196][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-05 16:04:37.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.224][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.238][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-05 16:04:37.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:37.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:37.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.292][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.295][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:37.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.298][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:37.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.305][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:37.311][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.313][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:37.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.375][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:37.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.393][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.394][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.405][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.421][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:37.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.453][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.464][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.468][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:37.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.496][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:37.521][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:37.522][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:37.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.534][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:37.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.540][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:37.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:37.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.618][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.627][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.631][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:37.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.658][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:37.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.704][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.714][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.717][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:37.727][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:37.728][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:37.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.742][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:37.743][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.745][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:37.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.799][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:37.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.816][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.825][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:37.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.854][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:04:37.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.893][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:37.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:37.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:04:37.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:37.917][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:37.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.948][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-04-05 16:04:37.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.951][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-04-05 16:04:37.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.100][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:38.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.116][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.126][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:38.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.155][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:38.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.193][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:38.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:38.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:38.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:38.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:38.238][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:38.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-04-05 16:04:38.240][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:38.241][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-04-05 16:04:38.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.802][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:38.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.819][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.819][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.820][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:38.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.859][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.869][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.873][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:38.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.901][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:38.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:38.925][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:38.926][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:38.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:38.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:38.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:38.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:38.942][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:38.944][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:38.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.021][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:39.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.046][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:39.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.098][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.113][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:39.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.142][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:39.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:39.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:39.167][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:39.184][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:04:39.198][biodb::testThat]
biodb.INFO [2025-04-05 16:04:39.199][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-05 16:04:39.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:04:39.201][biodb::testThat]
biodb.TRACE[2025-04-05 16:04:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:39.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:39.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:39.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:04:39.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:39.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:04:39.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.290][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:39.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:39.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:04:39.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:39.296][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:04:39.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.345][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:39.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.430][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.431][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.434][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.437][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.462][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.465][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.471][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.508][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.509][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.510][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.513][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.514][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.529][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.535][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.536][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.544][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-05 16:04:39.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.778][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.779][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.781][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.811][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.848][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.857][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.858][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.858][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.867][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.063][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:40.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.270][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.271][private$selectFields]
biodb.TRACE[2025-04-05 16:04:40.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:40.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:40.273][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.284][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.303][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.307][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.327][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.333][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.343][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.346][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.352][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.353][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.356][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.362][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.376][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.379][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.383][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.385][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:40.493][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:40.493][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:40.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:40.507][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:40.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:40.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:04:40.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:40.513][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:04:40.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:40.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:40.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:40.559][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:40.561][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:04:40.562][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:40.563][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:04:40.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:40.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:40.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:40.623][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:40.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.704][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.705][private$selectFields]
biodb.TRACE[2025-04-05 16:04:40.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:40.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:40.707][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.707][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.710][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.719][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.720][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.723][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.725][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.728][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.734][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.745][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.746][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.751][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.763][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.769][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.776][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.778][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.779][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.798][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.807][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.816][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:40.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.048][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.049][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.051][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.085][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.111][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.119][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.120][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.124][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.153][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.155][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.158][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:41.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.345][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.346][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.348][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.351][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.352][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.357][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.368][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.374][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.377][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.405][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.411][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.420][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:41.421][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:41.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.425][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.426][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.431][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.446][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.449][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.455][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:41.565][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:41.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:41.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:41.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:41.580][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:41.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:04:41.582][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:41.583][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:04:41.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.745][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:41.747][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:41.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:04:41.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:41.750][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:04:41.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.810][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:41.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.887][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.888][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.890][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.891][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.891][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.944][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.952][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.960][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.961][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.964][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.970][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.981][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.994][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-05 16:04:42.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.190][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.191][private$selectFields]
biodb.TRACE[2025-04-05 16:04:42.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:42.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:42.193][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.213][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.222][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.228][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.234][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.251][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.254][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.256][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.257][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.265][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.265][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.266][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.269][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.274][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.289][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.291][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.297][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-05 16:04:42.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.588][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.588][private$selectFields]
biodb.TRACE[2025-04-05 16:04:42.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:42.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:42.590][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.591][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.594][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.611][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.617][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.628][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.634][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.651][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.654][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.660][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.661][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.685][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.688][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.691][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.692][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.694][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:42.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:42.816][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:42.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:42.836][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:42.839][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:42.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:04:42.841][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:42.842][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:04:42.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.862][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:42.864][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:42.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:04:42.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:42.867][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:04:42.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:42.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.992][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.993][private$selectFields]
biodb.TRACE[2025-04-05 16:04:42.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:42.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:42.995][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.005][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.023][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.026][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.032][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.033][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.038][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.044][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.053][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.056][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.061][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.075][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.075][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.077][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.078][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.101][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.104][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.110][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.212][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-05 16:04:43.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.299][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.300][private$selectFields]
biodb.TRACE[2025-04-05 16:04:43.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:43.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:43.302][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.334][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.342][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.343][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.348][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.349][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.354][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.365][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.371][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.374][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.377][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.380][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.380][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.382][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.383][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.401][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.410][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.413][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.418][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:43.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.641][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.641][private$selectFields]
biodb.TRACE[2025-04-05 16:04:43.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:43.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:43.643][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.664][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.670][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.673][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.679][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.680][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.682][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.685][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.690][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.705][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.708][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.716][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.717][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.719][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.720][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.724][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.725][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.730][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.739][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.744][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.753][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:43.865][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:43.865][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:43.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:43.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:43.880][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:43.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:04:43.882][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:43.883][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:04:43.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:43.924][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:43.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:04:43.926][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:43.927][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:04:43.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.982][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:43.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.072][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.072][private$selectFields]
biodb.TRACE[2025-04-05 16:04:44.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:44.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:44.075][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.075][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.116][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.129][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.130][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.132][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.135][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.167][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.168][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.170][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.171][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.174][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.186][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.192][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.197][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.200][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.206][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:44.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.415][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.415][private$selectFields]
biodb.TRACE[2025-04-05 16:04:44.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:44.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:44.417][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.432][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.444][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.447][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.453][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.453][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.472][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.473][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.475][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.489][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.490][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.492][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.493][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.496][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.502][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.526][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.528][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:44.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.730][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.731][private$selectFields]
biodb.TRACE[2025-04-05 16:04:44.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:44.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:44.733][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.733][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.759][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.768][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.769][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.773][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.779][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.796][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.797][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.803][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.805][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.806][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.808][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.808][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.809][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.812][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.827][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.832][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.841][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:44.947][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:44.948][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:44.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:44.960][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:44.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:44.963][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:04:44.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:44.965][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:04:44.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:44.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.106][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:45.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:45.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:04:45.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:45.111][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:04:45.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:45.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:45.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.253][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.254][private$selectFields]
biodb.TRACE[2025-04-05 16:04:45.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:45.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:45.256][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.283][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.286][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.292][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.293][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.298][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.303][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.320][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.329][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.330][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.332][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.333][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.336][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.359][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.368][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-05 16:04:45.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.571][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.572][private$selectFields]
biodb.TRACE[2025-04-05 16:04:45.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:45.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:45.574][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.575][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.578][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.604][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.610][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.611][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.616][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.634][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.640][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.658][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.660][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:45.661][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:45.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.687][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.692][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:45.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-05 16:04:45.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:45.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:45.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:45.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:45.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:45.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:45.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:45.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.884][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.884][private$selectFields]
biodb.TRACE[2025-04-05 16:04:45.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:45.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:45.887][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:45.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.945][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.946][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.951][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.956][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:45.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:45.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.968][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:45.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.973][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:45.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:45.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:45.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:45.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.982][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.983][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:45.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.985][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:45.986][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:45.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:45.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.989][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:45.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:45.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:45.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.995][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:45.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:45.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:45.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:45.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:45.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.003][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.011][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.017][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:46.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:46.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:46.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:46.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:46.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:46.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:46.191][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:46.192][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:46.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:46.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:46.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:46.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:46.200][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:46.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:46.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:46.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:46.257][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:46.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.341][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.341][private$selectFields]
biodb.TRACE[2025-04-05 16:04:46.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:46.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:46.344][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.347][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.353][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.365][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.371][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.374][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.377][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.378][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.383][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.384][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.401][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.407][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.408][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.413][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.416][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.417][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.421][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.434][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.439][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.460][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:46.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:46.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.677][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.678][private$selectFields]
biodb.TRACE[2025-04-05 16:04:46.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:46.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:46.680][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.689][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.701][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.704][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.705][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.708][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.711][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.717][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.720][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.731][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.749][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.758][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.759][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:46.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.768][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.785][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.788][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:46.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:46.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:46.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:46.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:46.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:46.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:46.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:46.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:46.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:46.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:46.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.001][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.002][private$selectFields]
biodb.TRACE[2025-04-05 16:04:47.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:47.003][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:47.004][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.008][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.014][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.040][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.063][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.075][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:47.076][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:47.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.080][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.108][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:47.215][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:47.215][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:47.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:47.228][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:47.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:47.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:47.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:47.234][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:47.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:47.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:47.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:47.295][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:47.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.391][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.392][private$selectFields]
biodb.TRACE[2025-04-05 16:04:47.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:47.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:47.394][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.395][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.404][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.413][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.414][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.416][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.422][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.425][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.442][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.457][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.460][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.466][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.467][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.471][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.494][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.497][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.503][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:47.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.707][private$selectFields]
biodb.TRACE[2025-04-05 16:04:47.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:47.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:47.709][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:47.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.719][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.731][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.737][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.740][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.743][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.749][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.754][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.771][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.785][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:47.785][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:47.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.789][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.794][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.818][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:47.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:47.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:47.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:47.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:47.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:47.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:47.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:47.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:47.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.006][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.006][private$selectFields]
biodb.TRACE[2025-04-05 16:04:48.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:48.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:48.008][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.012][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.018][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.027][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.040][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.043][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.057][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.068][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.082][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:48.083][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:48.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.086][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.092][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.106][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.109][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.115][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:48.221][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:48.221][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:48.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:48.233][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:48.236][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:48.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:48.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:48.239][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:48.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:48.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:48.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:48.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:48.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.377][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.378][private$selectFields]
biodb.TRACE[2025-04-05 16:04:48.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:48.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:48.380][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.383][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.384][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.397][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.398][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.416][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.439][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.447][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.448][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.448][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.451][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.466][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.467][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.474][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.477][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.481][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.483][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:48.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-05 16:04:48.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.675][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.676][private$selectFields]
biodb.TRACE[2025-04-05 16:04:48.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:48.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:48.678][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.679][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.681][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.682][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.698][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.704][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.707][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.715][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.721][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.732][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.733][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.738][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.741][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.743][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.744][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.746][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:48.747][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:48.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.751][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.756][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.764][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.771][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.771][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.773][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.776][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.777][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.784][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-05 16:04:48.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:48.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:48.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:48.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:48.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:48.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:48.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.968][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.969][private$selectFields]
biodb.TRACE[2025-04-05 16:04:48.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:48.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:48.971][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:48.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:48.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:48.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:48.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:48.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:48.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.981][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:48.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:48.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:48.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:48.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:48.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:48.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:48.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:48.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:48.997][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.998][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:48.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:48.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.006][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.014][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.036][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.038][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.048][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:49.049][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:49.050][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.072][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.081][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:49.180][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:49.181][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:49.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:49.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:49.199][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:49.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:49.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:49.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:49.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:49.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:49.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:49.210][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:49.211][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:49.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:49.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:49.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:49.266][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:49.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.358][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.358][private$selectFields]
biodb.TRACE[2025-04-05 16:04:49.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:49.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:49.361][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.368][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.376][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.398][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.400][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.403][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.404][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.406][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.407][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.411][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.412][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.426][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.428][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.437][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.442][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.443][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.445][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.446][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.466][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.472][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.480][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:49.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.685][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.686][private$selectFields]
biodb.TRACE[2025-04-05 16:04:49.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:49.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:49.688][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.705][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.708][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.716][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.722][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.723][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.725][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.726][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.728][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.745][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.750][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.759][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.760][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:49.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.762][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.762][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:49.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.766][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.780][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.781][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.799][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.800][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.802][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:49.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:49.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:49.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:49.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:49.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:49.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:49.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:49.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:49.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.007][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.008][private$selectFields]
biodb.TRACE[2025-04-05 16:04:50.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:50.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:50.010][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.031][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.037][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.045][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.046][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.056][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.057][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.078][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.079][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.086][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.087][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.089][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:50.090][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:50.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.093][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.099][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.119][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.121][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:50.224][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:50.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:50.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:50.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:50.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:50.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:50.243][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:50.244][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:50.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:50.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:50.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:50.303][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:50.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.395][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.396][private$selectFields]
biodb.TRACE[2025-04-05 16:04:50.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:50.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:50.398][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.424][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.425][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.427][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.433][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.434][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.436][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.445][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.462][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.465][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.471][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.472][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.474][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.475][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.476][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.479][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.485][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.512][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:50.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.676][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.718][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.718][private$selectFields]
biodb.TRACE[2025-04-05 16:04:50.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:50.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:50.721][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:50.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.724][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.725][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.730][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.739][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.740][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.742][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.748][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.757][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.757][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.768][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:50.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.789][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.795][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.796][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:50.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.798][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:50.799][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:50.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.852][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:50.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:50.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:50.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:50.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:50.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:50.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:50.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.052][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.053][private$selectFields]
biodb.TRACE[2025-04-05 16:04:51.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:51.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:51.055][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.056][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.059][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.065][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.082][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.088][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.116][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.117][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.119][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.127][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.144][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.153][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.154][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.156][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:51.157][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:51.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.160][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.161][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.166][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.180][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.189][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:51.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:51.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:51.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:51.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:51.309][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:51.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:51.311][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:51.312][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:51.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:51.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:51.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:51.376][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:51.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.463][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.463][private$selectFields]
biodb.TRACE[2025-04-05 16:04:51.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:51.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:51.466][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.466][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.484][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.485][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.493][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.508][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.526][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.532][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.535][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.541][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.542][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.544][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.545][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.566][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.572][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.575][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.579][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.581][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-05 16:04:51.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:51.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:51.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:51.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:51.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:51.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:51.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.800][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.800][private$selectFields]
biodb.TRACE[2025-04-05 16:04:51.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:51.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:51.802][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:51.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.806][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.823][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.829][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.838][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.839][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.844][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.849][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:51.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.878][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.878][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.881][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:51.881][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:51.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.891][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:51.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:51.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:51.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:51.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-05 16:04:52.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:52.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:52.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:52.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:52.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:52.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:52.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.111][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:52.111][private$selectFields]
biodb.TRACE[2025-04-05 16:04:52.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:52.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:52.113][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:52.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.117][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.123][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.140][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.141][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.152][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.154][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.155][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.160][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.165][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.174][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:52.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.182][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.185][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.190][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.191][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:52.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.193][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:52.195][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:52.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.219][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.219][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.221][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.227][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:52.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:52.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:52.345][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:04:52.362][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-05 16:04:52.363][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-04-05 16:04:52.363][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-04-05 16:04:52.364][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-05 16:04:52.365][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:52.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:52.366][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:52.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:52.367][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:52.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1398 ]
> 
> proc.time()
   user  system elapsed 
 55.583   2.965 184.043

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.13.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)