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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hiAnnotator
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* checking for file ‘hiAnnotator/DESCRIPTION’ ... OK
* preparing ‘hiAnnotator’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Quitting from lines 48-68 (Intro.Rmd)
Error: processing vignette 'Intro.Rmd' failed with diagnostics:
The following seqlevels are to be dropped but are currently in use
(i.e. have ranges on them): chrM, chr1_random, chr2_random,
chr3_random, chr4_random, chr5_h2_hap1, chr5_random,
chr6_cox_hap1, chr6_qbl_hap2, chr6_random, chr8_random,
chr9_random, chr13_random, chr15_random, chr19_random,
chr21_random, chr22_h2_hap1, chr22_random, chrX_random. Please use
the 'pruning.mode' argument to control how to prune 'x', that is,
how to remove the ranges in 'x' that are on these sequences. For
example, do something like:
seqlevels(x, pruning.mode="coarse") <- new_seqlevels
or
keepSeqlevels(x, new_seqlevels, pruning.mode="coarse")
See ?seqinfo for a description of the pruning modes.
Execution halted