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BioC 3.5: BUILD report for GENE.E on toluca2

This page was generated on 2017-04-23 14:37:17 -0400 (Sun, 23 Apr 2017).

Package 504/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENE.E 1.15.1
Joshua Gould
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GENE.E
Last Changed Rev: 125071 / Revision: 129046
Last Changed Date: 2016-12-13 09:36:38 -0500 (Tue, 13 Dec 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: GENE.E
Version: 1.15.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GENE.E
StartedAt: 2017-04-22 20:25:23 -0400 (Sat, 22 Apr 2017)
EndedAt: 2017-04-22 20:25:29 -0400 (Sat, 22 Apr 2017)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GENE.E
###
##############################################################################
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* checking for file ‘GENE.E/DESCRIPTION’ ... OK
* preparing ‘GENE.E’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Error in H5Dcreate(loc$H5Identifier, dataset, tid, sid, dcpl = dcpl) : 
  HDF5. Dataset. Unable to initialize object.
Error in H5Dopen(h5loc, name) : HDF5. Dataset. Object not found.
Error in h5writeDatasetHelper(obj = obj, h5dataset = h5dataset, index = index,  : 
  object 'h5dataset' not found
Error in h5writeDatasetHelper(obj = obj, h5dataset = h5dataset, index = index,  : 
  object 'h5dataset' not found
Error in H5Sclose(h5spaceFile) : object 'h5spaceFile' not found
Error in H5Dclose(h5dataset) : object 'h5dataset' not found
Quitting from lines 46-48 (GENE.E-vignette.Rmd) 
Error: processing vignette 'GENE.E-vignette.Rmd' failed with diagnostics:
Failed connect to localhost:9998; Connection refused
Execution halted