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BioC 3.5: BUILD report for GENE.E on tokay2

This page was generated on 2017-08-16 13:22:18 -0400 (Wed, 16 Aug 2017).

Package 505/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENE.E 1.16.0
Joshua Gould
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GENE.E
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded [ ERROR ] skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: GENE.E
Version: 1.16.0
Command: chmod a+r GENE.E -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data GENE.E
StartedAt: 2017-08-15 19:52:23 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 19:52:54 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 31.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r GENE.E -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data GENE.E
###
##############################################################################
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* checking for file 'GENE.E/DESCRIPTION' ... OK
* preparing 'GENE.E':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Error in H5Dcreate(loc$H5Identifier, dataset, tid, sid, dcpl = dcpl) : 
  HDF5. Dataset. Unable to initialize object.
Error in H5Dopen(h5loc, name) : HDF5. Dataset. Object not found.
Error in h5writeDatasetHelper(obj = obj, h5dataset = h5dataset, index = index,  : 
  object 'h5dataset' not found
Error in h5writeDatasetHelper(obj = obj, h5dataset = h5dataset, index = index,  : 
  object 'h5dataset' not found
Error in H5Sclose(h5spaceFile) : object 'h5spaceFile' not found
Error in H5Dclose(h5dataset) : object 'h5dataset' not found
Quitting from lines 46-48 (GENE.E-vignette.Rmd) 
Error: processing vignette 'GENE.E-vignette.Rmd' failed with diagnostics:
Failed to connect to localhost port 9998: Connection refused
Execution halted