BioC experimental data: CHECK report for hapmapsnp5 on zin2
This page was generated on 2016-10-08 19:29:06 -0700 (Sat, 08 Oct 2016).
hapmapsnp5 1.14.0 Benilton Carvalho
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/hapmapsnp5 | Last Changed Rev: 3760 / Revision: 3935 | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
Summary
Package: hapmapsnp5 |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings hapmapsnp5_1.14.0.tar.gz |
StartedAt: 2016-10-08 09:38:00 -0700 (Sat, 08 Oct 2016) |
EndedAt: 2016-10-08 09:38:20 -0700 (Sat, 08 Oct 2016) |
EllapsedTime: 20.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hapmapsnp5.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings hapmapsnp5_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/hapmapsnp5.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hapmapsnp5/DESCRIPTION’ ... OK
* this is package ‘hapmapsnp5’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hapmapsnp5’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 134.6Mb
sub-directories of 1Mb or more:
celFiles 134.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.3-data-experiment/meat/hapmapsnp5.Rcheck/00check.log’
for details.
hapmapsnp5.Rcheck/00install.out:
* installing *source* package ‘hapmapsnp5’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (hapmapsnp5)
hapmapsnp5.Rcheck/hapmapsnp5-Ex.timings:
name | user | system | elapsed
|
hapmapsnp5-package | 0.000 | 0.000 | 0.001 |
|