BioC experimental data: CHECK report for geuvPack on zin2
This page was generated on 2016-10-08 19:29:51 -0700 (Sat, 08 Oct 2016).
geuvPack 1.4.0 VJ Carey
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/geuvPack | Last Changed Rev: 3760 / Revision: 3935 | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | OK | |
Summary
Package: geuvPack |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geuvPack_1.4.0.tar.gz |
StartedAt: 2016-10-08 09:33:10 -0700 (Sat, 08 Oct 2016) |
EndedAt: 2016-10-08 09:35:03 -0700 (Sat, 08 Oct 2016) |
EllapsedTime: 112.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: geuvPack.Rcheck |
Warnings: 1 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geuvPack_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/geuvPack.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geuvPack/DESCRIPTION’ ... OK
* this is package ‘geuvPack’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geuvPack’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 92.5Mb
sub-directories of 1Mb or more:
data 92.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data with usage in documentation object 'gsvs' but not in code:
gsvs
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
geuFPKM 8.155 0.052 8.205
gsvs 7.875 0.051 7.927
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.3-data-experiment/meat/geuvPack.Rcheck/00check.log’
for details.
geuvPack.Rcheck/00install.out:
* installing *source* package ‘geuvPack’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geuvPack)
geuvPack.Rcheck/geuvPack-Ex.timings:
name | user | system | elapsed
|
geuFPKM | 8.155 | 0.052 | 8.205 |
|
gsvs | 7.875 | 0.051 | 7.927 |
|
gtpath | 0.000 | 0.000 | 0.001 |
|