BioC experimental data: CHECK report for geuvPack on moscato2
This page was generated on 2016-10-08 19:31:45 -0700 (Sat, 08 Oct 2016).
geuvPack 1.4.0 VJ Carey
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/geuvPack | Last Changed Rev: 3760 / Revision: 3935 | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK | |
Summary
Package: geuvPack
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Version: 1.4.0
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Command: rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.4.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.4.0.tar.gz
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StartedAt: 2016-10-08 12:12:47 -0700 (Sat, 08 Oct 2016)
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EndedAt: 2016-10-08 12:18:09 -0700 (Sat, 08 Oct 2016)
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EllapsedTime: 321.9 seconds
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RetCode: 0
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Status: WARNINGS
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CheckDir: geuvPack.Rcheck
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Warnings: 1
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Command output
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### Running command:
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### rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.4.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.4.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/geuvPack.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geuvPack/DESCRIPTION' ... OK
* this is package 'geuvPack' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'geuvPack' can be installed ... OK
* checking installed package size ... NOTE
installed size is 92.5Mb
sub-directories of 1Mb or more:
data 92.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data with usage in documentation object 'gsvs' but not in code:
gsvs
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
geuFPKM 9.08 0.14 9.22
gsvs 8.92 0.20 9.14
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
geuFPKM 8.59 0.20 8.80
gsvs 8.07 0.17 8.24
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/geuvPack.Rcheck/00check.log'
for details.
geuvPack.Rcheck/00install.out:
install for i386
* installing *source* package 'geuvPack' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'geuvPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geuvPack' as geuvPack_1.4.0.zip
* DONE (geuvPack)
geuvPack.Rcheck/examples_i386/geuvPack-Ex.timings:
name | user | system | elapsed
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geuFPKM | 9.08 | 0.14 | 9.22 |
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gsvs | 8.92 | 0.20 | 9.14 |
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gtpath | 0 | 0 | 0 |
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geuvPack.Rcheck/examples_x64/geuvPack-Ex.timings:
name | user | system | elapsed
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geuFPKM | 8.59 | 0.20 | 8.80 |
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gsvs | 8.07 | 0.17 | 8.24 |
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gtpath | 0 | 0 | 0 |
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