BioC experimental data: CHECK report for geuvPack on windows2.bioconductor.org
This page was generated on 2015-10-24 19:25:59 -0400 (Sat, 24 Oct 2015).
geuvPack 1.3.0 VJ Carey
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geuvPack | Last Changed Rev: 3462 / Revision: 3473 | Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: geuvPack
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Version: 1.3.0
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Command: rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.3.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.3.0.tar.gz
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StartedAt: 2015-10-24 12:17:57 -0400 (Sat, 24 Oct 2015)
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EndedAt: 2015-10-24 12:20:06 -0400 (Sat, 24 Oct 2015)
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EllapsedTime: 129.6 seconds
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RetCode: 0
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Status: OK
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CheckDir: geuvPack.Rcheck
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Warnings: 0
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Command output
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### Running command:
###
### rm -rf geuvPack.buildbin-libdir geuvPack.Rcheck && mkdir geuvPack.buildbin-libdir geuvPack.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geuvPack.buildbin-libdir geuvPack_1.3.0.tar.gz >geuvPack.Rcheck\00install.out 2>&1 && cp geuvPack.Rcheck\00install.out geuvPack-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=geuvPack.buildbin-libdir --install="check:geuvPack-install.out" --force-multiarch --no-vignettes --timings geuvPack_1.3.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/geuvPack.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geuvPack/DESCRIPTION' ... OK
* this is package 'geuvPack' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'geuvPack' can be installed ... OK
* checking installed package size ... NOTE
installed size is 78.6Mb
sub-directories of 1Mb or more:
data 78.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geuFPKM 8.13 0.08 8.2
** running examples for arch 'x64' ... [11s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geuFPKM 7.66 0.14 7.79
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'c:/biocbld/bbs-3.3-data-experiment/meat/geuvPack.Rcheck/00check.log'
for details.
geuvPack.Rcheck/00install.out:
install for i386
* installing *source* package 'geuvPack' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'geuvPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geuvPack' as geuvPack_1.3.0.zip
* DONE (geuvPack)
geuvPack.Rcheck/examples_i386/geuvPack-Ex.timings:
name | user | system | elapsed
|
geuFPKM | 8.13 | 0.08 | 8.20 |
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gtpath | 0 | 0 | 0 |
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geuvPack.Rcheck/examples_x64/geuvPack-Ex.timings:
name | user | system | elapsed
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geuFPKM | 7.66 | 0.14 | 7.79 |
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gtpath | 0 | 0 | 0 |
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