estrogen 1.18.0
R. Gentleman
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/estrogen | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf estrogen.buildbin-libdir estrogen.Rcheck && mkdir estrogen.buildbin-libdir estrogen.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=estrogen.buildbin-libdir estrogen_1.18.0.tar.gz >estrogen.Rcheck\00install.out 2>&1 && cp estrogen.Rcheck\00install.out estrogen-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=estrogen.buildbin-libdir --install="check:estrogen-install.out" --force-multiarch --no-vignettes --timings estrogen_1.18.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/estrogen.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'estrogen/DESCRIPTION' ... OK
* this is package 'estrogen' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'estrogen' can be installed ... OK
* checking installed package size ... NOTE
installed size is 83.1Mb
sub-directories of 1Mb or more:
extdata 82.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'affy'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'affy'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gentlecol: no visible global function definition for 'col2rgb'
gentlecol: no visible global function definition for 'approxfun'
gentlecol: no visible global function definition for 'rgb'
Undefined global functions or variables:
approxfun col2rgb rgb
Consider adding
importFrom("grDevices", "col2rgb", "rgb")
importFrom("stats", "approxfun")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/estrogen.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'estrogen' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu95av2cdf'
Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu95av2cdf'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'estrogen' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'estrogen' as estrogen_1.18.0.zip
* DONE (estrogen)