BioC experimental data: CHECK report for TBX20BamSubset on morelia
This page was generated on 2015-11-25 16:26:24 -0800 (Wed, 25 Nov 2015).
TBX20BamSubset 1.7.0 D. Bindreither
Snapshot Date: 2015-11-25 07:17:28 -0800 (Wed, 25 Nov 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/TBX20BamSubset | Last Changed Rev: 3462 / Revision: 3504 | Last Changed Date: 2015-10-13 13:20:35 -0700 (Tue, 13 Oct 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: TBX20BamSubset |
Version: 1.7.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings TBX20BamSubset_1.7.0.tar.gz |
StartedAt: 2015-11-25 11:23:39 -0800 (Wed, 25 Nov 2015) |
EndedAt: 2015-11-25 11:25:18 -0800 (Wed, 25 Nov 2015) |
EllapsedTime: 98.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TBX20BamSubset.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings TBX20BamSubset_1.7.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/TBX20BamSubset.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TBX20BamSubset/DESCRIPTION’ ... OK
* this is package ‘TBX20BamSubset’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TBX20BamSubset’ can be installed ... [8s/11s] OK
* checking installed package size ... NOTE
installed size is 98.3Mb
sub-directories of 1Mb or more:
extdata 98.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘xtable’
All declared Imports should be used.
Package in Depends field not imported from: ‘Rsamtools’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.3-data-experiment/meat/TBX20BamSubset.Rcheck/00check.log’
for details.
TBX20BamSubset.Rcheck/00install.out:
* installing *source* package ‘TBX20BamSubset’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TBX20BamSubset)
TBX20BamSubset.Rcheck/TBX20BamSubset-Ex.timings:
name | user | system | elapsed
|
TBX20BamSubset-package | 0.003 | 0.000 | 0.003 |
|
getBamFileList | 0.004 | 0.000 | 0.005 |
|