BioC experimental data: CHECK report for MEDIPSData on zin2
This page was generated on 2016-10-08 19:29:24 -0700 (Sat, 08 Oct 2016).
MEDIPSData 1.8.0 Lukas Chavez
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/MEDIPSData | Last Changed Rev: 3760 / Revision: 3935 | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
Summary
Package: MEDIPSData |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings MEDIPSData_1.8.0.tar.gz |
StartedAt: 2016-10-08 09:47:32 -0700 (Sat, 08 Oct 2016) |
EndedAt: 2016-10-08 09:47:44 -0700 (Sat, 08 Oct 2016) |
EllapsedTime: 12.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MEDIPSData.Rcheck |
Warnings: 0 |
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings MEDIPSData_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/MEDIPSData.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MEDIPSData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEDIPSData’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEDIPSData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 47.1Mb
sub-directories of 1Mb or more:
data 11.3Mb
extdata 35.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.3-data-experiment/meat/MEDIPSData.Rcheck/00check.log’
for details.
MEDIPSData.Rcheck/00install.out:
* installing *source* package ‘MEDIPSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MEDIPSData)
MEDIPSData.Rcheck/MEDIPSData-Ex.timings:
name | user | system | elapsed
|
CS | 0 | 0 | 0 |
|
DE_Input | 0.000 | 0.000 | 0.001 |
|
DE_MeDIP | 0 | 0 | 0 |
|
hESCs_Input | 0.000 | 0.000 | 0.001 |
|
hESCs_MeDIP | 0.001 | 0.001 | 0.000 |
|
mart_gene | 0 | 0 | 0 |
|
resultTable | 0.001 | 0.000 | 0.001 |
|