GSE62944 1.0.0
Bioconductor Package Maintainer
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/GSE62944 | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf GSE62944.buildbin-libdir GSE62944.Rcheck && mkdir GSE62944.buildbin-libdir GSE62944.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSE62944.buildbin-libdir GSE62944_1.0.0.tar.gz >GSE62944.Rcheck\00install.out 2>&1 && cp GSE62944.Rcheck\00install.out GSE62944-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSE62944.buildbin-libdir --install="check:GSE62944-install.out" --force-multiarch --no-vignettes --timings GSE62944_1.0.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSE62944/DESCRIPTION' ... OK
* this is package 'GSE62944' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSE62944' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found directory 'R' with no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Error in tools:::.check_packages_used(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
* checking S3 generic/method consistency ... WARNING
Error in tools::checkS3methods(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
Error in tools::checkReplaceFuns(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
Error in tools::checkFF(package = "GSE62944", registration = FALSE, check_DUP = TRUE) :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
Error in tools::codocClasses(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
* checking Rd \usage sections ... NOTE
Error in tools::checkDocStyle(package = "GSE62944") :
directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.buildbin-libdir/GSE62944' does not contain R code
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSE62944-package 2.2 0.06 22.02
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSE62944-package 2.54 0.06 10.56
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'DESeq2'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 WARNINGs, 4 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/GSE62944.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'GSE62944' ...
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GSE62944' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSE62944' as GSE62944_1.0.0.zip
* DONE (GSE62944)