CardinalWorkflows 1.3.0
Kyle D. Bemis
| Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/CardinalWorkflows | | Last Changed Rev: 3462 / Revision: 3473 | | Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && mkdir CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CardinalWorkflows.buildbin-libdir CardinalWorkflows_1.3.0.tar.gz >CardinalWorkflows.Rcheck\00install.out 2>&1 && cp CardinalWorkflows.Rcheck\00install.out CardinalWorkflows-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=CardinalWorkflows.buildbin-libdir --install="check:CardinalWorkflows-install.out" --force-multiarch --no-vignettes --timings CardinalWorkflows_1.3.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CardinalWorkflows/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CardinalWorkflows' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CardinalWorkflows' can be installed ... WARNING
Found the following significant warnings:
Warning: multiple methods tables found for 'mz<-'
See 'c:/biocbld/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 140.9Mb
sub-directories of 1Mb or more:
data 134.8Mb
doc 6.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [25s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
rcc-data 9.30 0.47 9.78
cardinal-data 8.05 0.25 8.30
** running examples for arch 'x64' ... [22s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
rcc-data 7.79 0.44 8.22
cardinal-data 6.94 0.15 7.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'c:/biocbld/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'CardinalWorkflows' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: multiple methods tables found for 'mz<-'
install for x64
* installing *source* package 'CardinalWorkflows' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'mz<-'
* MD5 sums
packaged installation of 'CardinalWorkflows' as CardinalWorkflows_1.3.0.zip
* DONE (CardinalWorkflows)