BioC experimental data: CHECK report for CardinalWorkflows on linux2.bioconductor.org

Package: CardinalWorkflows

Version: 1.3.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings CardinalWorkflows_1.3.0.tar.gz

StartedAt: 2015-10-24 11:52:21 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 11:53:46 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 85.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: CardinalWorkflows.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings CardinalWorkflows_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CardinalWorkflows/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CardinalWorkflows’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CardinalWorkflows’ can be installed ... [4s/4s] WARNING
Found the following significant warnings:
  Warning: multiple methods tables found for ‘mz<-’
See ‘/home/biocbuild/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 140.8Mb
  sub-directories of 1Mb or more:
    data  134.9Mb
    doc     5.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [25s/25s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
rcc-data      9.575  0.416   9.993
cardinal-data 8.005  0.376   8.382
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log’
for details.

* installing *source* package ‘CardinalWorkflows’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: multiple methods tables found for ‘mz<-’
* DONE (CardinalWorkflows)

name	user	system	elapsed
cardinal-data	8.005	0.376	8.382
pig206-data	3.583	0.084	3.667
rcc-data	9.575	0.416	9.993