| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-02 11:35 -0400 (Sat, 02 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4718 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-02 01:15:53 -0400 (Sat, 02 May 2026) |
| EndedAt: 2026-05-02 01:31:24 -0400 (Sat, 02 May 2026) |
| EllapsedTime: 930.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-02 05:15:54 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 35.773 0.593 36.406
corr_plot 34.536 0.469 35.110
FSmethod 34.341 0.493 34.911
pred_ensembel 13.050 0.298 12.008
enrichfindP 0.620 0.040 15.430
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 96.612290
iter 10 value 85.136949
iter 20 value 84.940479
final value 84.940476
converged
Fitting Repeat 2
# weights: 103
initial value 94.688018
iter 10 value 84.822374
iter 20 value 84.551302
iter 30 value 84.541455
final value 84.541454
converged
Fitting Repeat 3
# weights: 103
initial value 96.783360
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.574151
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.686161
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.501277
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 94.387598
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 93.656357
iter 10 value 88.520978
iter 20 value 88.340305
iter 30 value 88.278881
iter 40 value 88.269296
iter 50 value 88.268897
final value 88.268889
converged
Fitting Repeat 4
# weights: 305
initial value 94.538512
final value 93.841750
converged
Fitting Repeat 5
# weights: 305
initial value 99.719191
iter 10 value 92.828623
final value 92.158508
converged
Fitting Repeat 1
# weights: 507
initial value 106.492733
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 113.604333
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 112.177063
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 110.386288
iter 10 value 89.507518
iter 20 value 86.013965
iter 30 value 86.005029
final value 86.005013
converged
Fitting Repeat 5
# weights: 507
initial value 113.514460
iter 10 value 92.945520
final value 92.945355
converged
Fitting Repeat 1
# weights: 103
initial value 100.352816
iter 10 value 94.059588
iter 20 value 93.550889
iter 30 value 86.110374
iter 40 value 83.779183
iter 50 value 83.684953
iter 60 value 82.852442
iter 70 value 82.327429
final value 82.299569
converged
Fitting Repeat 2
# weights: 103
initial value 99.786859
iter 10 value 93.792837
iter 20 value 92.490359
iter 30 value 92.227966
iter 40 value 91.411999
iter 50 value 87.599481
iter 60 value 86.999186
iter 70 value 85.042718
iter 80 value 81.285072
iter 90 value 81.144382
iter 100 value 81.092320
final value 81.092320
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.673367
iter 10 value 94.058898
iter 20 value 94.020166
iter 30 value 93.512602
iter 40 value 93.459395
iter 50 value 93.429296
iter 60 value 92.923453
iter 70 value 83.952473
iter 80 value 83.776176
iter 90 value 83.740691
iter 100 value 83.726342
final value 83.726342
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.815541
iter 10 value 94.056690
iter 20 value 93.489383
iter 30 value 89.393657
iter 40 value 88.046241
iter 50 value 81.912753
iter 60 value 81.006097
iter 70 value 80.175493
iter 80 value 80.085208
iter 90 value 80.069072
iter 100 value 80.056170
final value 80.056170
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.261859
iter 10 value 93.502458
iter 20 value 84.073894
iter 30 value 82.239236
iter 40 value 81.397257
iter 50 value 81.208905
iter 60 value 80.455942
iter 70 value 79.918315
final value 79.908797
converged
Fitting Repeat 1
# weights: 305
initial value 105.430166
iter 10 value 94.119058
iter 20 value 90.893539
iter 30 value 82.380950
iter 40 value 81.061321
iter 50 value 79.857204
iter 60 value 79.317670
iter 70 value 78.828103
iter 80 value 78.704967
iter 90 value 78.654488
iter 100 value 78.648808
final value 78.648808
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.765470
iter 10 value 94.009136
iter 20 value 86.092124
iter 30 value 84.643106
iter 40 value 83.056243
iter 50 value 80.860478
iter 60 value 79.822990
iter 70 value 79.089745
iter 80 value 78.490461
iter 90 value 78.280373
iter 100 value 78.248498
final value 78.248498
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.212174
iter 10 value 93.850636
iter 20 value 87.205171
iter 30 value 85.204001
iter 40 value 84.185174
iter 50 value 82.501406
iter 60 value 81.769992
iter 70 value 81.222059
iter 80 value 80.181857
iter 90 value 79.839655
iter 100 value 79.593199
final value 79.593199
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.509830
iter 10 value 93.371102
iter 20 value 93.166748
iter 30 value 91.702622
iter 40 value 86.860961
iter 50 value 85.324640
iter 60 value 82.593216
iter 70 value 79.897583
iter 80 value 79.462643
iter 90 value 78.807763
iter 100 value 78.692707
final value 78.692707
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 125.177919
iter 10 value 92.815742
iter 20 value 92.417826
iter 30 value 86.457041
iter 40 value 82.441635
iter 50 value 80.947868
iter 60 value 79.326236
iter 70 value 78.923145
iter 80 value 78.811399
iter 90 value 78.711372
iter 100 value 78.679511
final value 78.679511
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.789236
iter 10 value 93.311283
iter 20 value 85.030218
iter 30 value 82.433162
iter 40 value 81.911468
iter 50 value 79.490935
iter 60 value 78.940075
iter 70 value 78.877185
iter 80 value 78.797329
iter 90 value 78.711971
iter 100 value 78.678104
final value 78.678104
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.035382
iter 10 value 87.294218
iter 20 value 81.472766
iter 30 value 80.073850
iter 40 value 79.897413
iter 50 value 79.501097
iter 60 value 79.063563
iter 70 value 79.008885
iter 80 value 78.975259
iter 90 value 78.885138
iter 100 value 78.810994
final value 78.810994
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.653405
iter 10 value 95.514845
iter 20 value 92.966776
iter 30 value 87.698088
iter 40 value 80.896126
iter 50 value 79.821175
iter 60 value 79.607418
iter 70 value 79.158112
iter 80 value 78.941275
iter 90 value 78.791426
iter 100 value 78.307705
final value 78.307705
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 123.777529
iter 10 value 94.155019
iter 20 value 92.130145
iter 30 value 83.524606
iter 40 value 82.087158
iter 50 value 81.360710
iter 60 value 80.538792
iter 70 value 79.266018
iter 80 value 78.990495
iter 90 value 78.935322
iter 100 value 78.813162
final value 78.813162
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.270733
iter 10 value 93.845195
iter 20 value 84.823146
iter 30 value 81.556640
iter 40 value 80.300325
iter 50 value 79.633216
iter 60 value 79.044016
iter 70 value 78.592238
iter 80 value 78.552937
iter 90 value 78.448650
iter 100 value 78.257132
final value 78.257132
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.918830
final value 94.054639
converged
Fitting Repeat 2
# weights: 103
initial value 95.416460
final value 94.055041
converged
Fitting Repeat 3
# weights: 103
initial value 96.041092
final value 94.054707
converged
Fitting Repeat 4
# weights: 103
initial value 95.463426
iter 10 value 92.947725
iter 20 value 92.947054
iter 30 value 92.945927
iter 40 value 92.141295
iter 50 value 86.492891
iter 60 value 84.346876
iter 70 value 84.157156
final value 84.156704
converged
Fitting Repeat 5
# weights: 103
initial value 104.871764
final value 94.054435
converged
Fitting Repeat 1
# weights: 305
initial value 95.270431
iter 10 value 89.058260
iter 20 value 89.056047
iter 30 value 89.042481
iter 40 value 84.638843
iter 50 value 84.024253
iter 60 value 83.132837
final value 83.132607
converged
Fitting Repeat 2
# weights: 305
initial value 98.179110
iter 10 value 94.057486
iter 20 value 94.052969
iter 30 value 93.963170
iter 40 value 83.286882
iter 50 value 83.184809
iter 60 value 83.181979
iter 70 value 80.710035
iter 80 value 77.998005
iter 90 value 77.769960
iter 100 value 77.628561
final value 77.628561
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.225306
iter 10 value 94.057938
iter 20 value 94.044336
iter 30 value 92.368686
iter 40 value 91.938575
iter 50 value 91.935259
iter 50 value 91.935258
final value 91.935250
converged
Fitting Repeat 4
# weights: 305
initial value 101.008778
iter 10 value 94.057358
iter 20 value 94.038494
iter 30 value 91.994296
iter 40 value 91.990762
iter 50 value 88.620646
iter 60 value 82.603695
iter 70 value 82.369289
iter 80 value 82.368882
iter 90 value 81.876517
iter 100 value 81.580555
final value 81.580555
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.704204
iter 10 value 94.057266
iter 20 value 94.051114
iter 30 value 94.024025
iter 40 value 92.839118
iter 50 value 92.838490
iter 50 value 92.838490
iter 50 value 92.838489
final value 92.838489
converged
Fitting Repeat 1
# weights: 507
initial value 95.418907
iter 10 value 92.954493
iter 20 value 92.953092
iter 30 value 84.727178
iter 40 value 83.237491
iter 50 value 83.201828
iter 60 value 83.201612
iter 70 value 83.001769
iter 80 value 82.721556
final value 82.673000
converged
Fitting Repeat 2
# weights: 507
initial value 107.015448
iter 10 value 92.953934
iter 20 value 92.948021
iter 30 value 92.947496
iter 40 value 92.946684
iter 50 value 87.458788
iter 60 value 84.167033
iter 70 value 83.536563
iter 80 value 83.493397
iter 90 value 83.480103
iter 100 value 83.364236
final value 83.364236
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.927070
iter 10 value 92.180591
iter 20 value 92.173562
iter 30 value 91.822762
iter 40 value 87.447017
iter 50 value 82.316342
iter 60 value 80.793291
iter 70 value 78.444650
iter 80 value 77.880067
iter 90 value 77.385591
iter 100 value 77.325982
final value 77.325982
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.301811
iter 10 value 92.953813
iter 20 value 92.950526
iter 30 value 92.942286
iter 40 value 92.941529
iter 50 value 92.160629
iter 60 value 92.158351
iter 70 value 92.153698
final value 92.153632
converged
Fitting Repeat 5
# weights: 507
initial value 103.343923
iter 10 value 92.948915
iter 20 value 92.947221
iter 30 value 91.845046
iter 40 value 86.572783
iter 50 value 84.751809
iter 60 value 79.968573
iter 70 value 78.421273
iter 80 value 77.428160
iter 90 value 77.051316
iter 100 value 76.896465
final value 76.896465
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.761088
iter 10 value 93.819019
iter 20 value 93.806016
final value 93.805290
converged
Fitting Repeat 2
# weights: 103
initial value 96.653212
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.278275
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.310269
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 108.417484
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.662324
final value 93.962733
converged
Fitting Repeat 2
# weights: 305
initial value 101.140849
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.684714
final value 93.915746
converged
Fitting Repeat 4
# weights: 305
initial value 111.845345
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.344237
iter 10 value 92.800472
final value 92.792105
converged
Fitting Repeat 1
# weights: 507
initial value 107.116745
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 101.392633
final value 93.915746
converged
Fitting Repeat 3
# weights: 507
initial value 107.092355
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 98.421732
final value 93.915746
converged
Fitting Repeat 5
# weights: 507
initial value 114.293495
final value 93.915746
converged
Fitting Repeat 1
# weights: 103
initial value 103.696262
iter 10 value 94.080102
iter 20 value 93.737965
iter 30 value 91.275830
iter 40 value 88.396420
iter 50 value 86.693107
iter 60 value 84.372519
iter 70 value 83.907999
iter 80 value 83.874027
iter 90 value 83.870848
final value 83.869679
converged
Fitting Repeat 2
# weights: 103
initial value 102.898065
iter 10 value 93.613790
iter 20 value 90.525712
iter 30 value 90.189114
iter 40 value 87.644199
iter 50 value 85.608415
iter 60 value 85.399304
iter 70 value 85.025603
iter 80 value 84.156012
iter 90 value 83.373471
iter 100 value 83.306434
final value 83.306434
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.985908
iter 10 value 93.982525
iter 20 value 85.120095
iter 30 value 84.756140
iter 40 value 84.688476
iter 50 value 84.677828
iter 60 value 84.286350
iter 70 value 84.253242
final value 84.253090
converged
Fitting Repeat 4
# weights: 103
initial value 100.473784
iter 10 value 94.035558
iter 20 value 93.785636
iter 30 value 92.738604
iter 40 value 91.909213
iter 50 value 90.934363
iter 60 value 90.516375
iter 70 value 90.441145
iter 80 value 90.044844
iter 90 value 89.467164
iter 100 value 89.466626
final value 89.466626
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.223864
iter 10 value 94.060054
iter 20 value 93.682451
iter 30 value 93.143881
iter 40 value 84.771513
iter 50 value 84.499670
iter 60 value 83.992072
iter 70 value 83.908887
iter 80 value 83.873081
iter 90 value 83.871453
final value 83.865279
converged
Fitting Repeat 1
# weights: 305
initial value 104.820091
iter 10 value 94.066506
iter 20 value 93.389530
iter 30 value 93.089488
iter 40 value 85.214901
iter 50 value 84.555137
iter 60 value 84.445598
iter 70 value 84.196761
iter 80 value 83.835925
iter 90 value 82.803659
iter 100 value 82.551262
final value 82.551262
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 119.811819
iter 10 value 94.057132
iter 20 value 86.437847
iter 30 value 85.231198
iter 40 value 83.737573
iter 50 value 82.450211
iter 60 value 82.053602
iter 70 value 81.732019
iter 80 value 81.636774
iter 90 value 81.260687
iter 100 value 81.198531
final value 81.198531
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.767163
iter 10 value 93.943198
iter 20 value 90.737941
iter 30 value 88.141723
iter 40 value 84.648398
iter 50 value 83.637085
iter 60 value 82.760493
iter 70 value 81.920759
iter 80 value 81.243858
iter 90 value 81.129183
iter 100 value 80.812668
final value 80.812668
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.761480
iter 10 value 94.011335
iter 20 value 90.902657
iter 30 value 85.779375
iter 40 value 84.636715
iter 50 value 84.293242
iter 60 value 84.000603
iter 70 value 83.752187
iter 80 value 82.992447
iter 90 value 82.726202
iter 100 value 82.631084
final value 82.631084
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.125001
iter 10 value 94.554219
iter 20 value 94.079778
iter 30 value 92.382961
iter 40 value 84.688458
iter 50 value 84.073438
iter 60 value 83.351429
iter 70 value 82.903193
iter 80 value 82.369193
iter 90 value 81.670626
iter 100 value 81.578879
final value 81.578879
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.400747
iter 10 value 94.160225
iter 20 value 87.763854
iter 30 value 85.875461
iter 40 value 83.363231
iter 50 value 82.913783
iter 60 value 82.441018
iter 70 value 82.238575
iter 80 value 82.144189
iter 90 value 82.096873
iter 100 value 81.933153
final value 81.933153
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.094732
iter 10 value 91.027201
iter 20 value 85.572128
iter 30 value 84.320118
iter 40 value 83.058474
iter 50 value 82.051391
iter 60 value 81.509068
iter 70 value 81.470883
iter 80 value 81.438852
iter 90 value 81.428458
iter 100 value 81.416992
final value 81.416992
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.148795
iter 10 value 94.023717
iter 20 value 89.756111
iter 30 value 87.386297
iter 40 value 85.464974
iter 50 value 84.674506
iter 60 value 82.636594
iter 70 value 82.215710
iter 80 value 81.751159
iter 90 value 81.505897
iter 100 value 81.423770
final value 81.423770
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.847844
iter 10 value 92.208837
iter 20 value 84.871049
iter 30 value 84.370574
iter 40 value 83.067873
iter 50 value 82.139876
iter 60 value 81.778318
iter 70 value 81.362432
iter 80 value 80.867255
iter 90 value 80.763843
iter 100 value 80.705487
final value 80.705487
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.960666
iter 10 value 94.359183
iter 20 value 89.270792
iter 30 value 88.759406
iter 40 value 84.432786
iter 50 value 83.696486
iter 60 value 83.075746
iter 70 value 82.547086
iter 80 value 81.866157
iter 90 value 81.164332
iter 100 value 80.922569
final value 80.922569
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.768291
final value 94.054532
converged
Fitting Repeat 2
# weights: 103
initial value 95.502526
iter 10 value 92.894630
iter 10 value 92.894629
iter 10 value 92.894629
final value 92.894629
converged
Fitting Repeat 3
# weights: 103
initial value 97.887372
iter 10 value 92.281778
iter 20 value 92.249548
iter 30 value 91.214126
iter 40 value 91.209099
iter 50 value 91.206162
iter 60 value 91.206054
final value 91.206004
converged
Fitting Repeat 4
# weights: 103
initial value 104.801092
final value 94.054773
converged
Fitting Repeat 5
# weights: 103
initial value 94.561832
final value 94.054738
converged
Fitting Repeat 1
# weights: 305
initial value 94.288430
iter 10 value 94.057290
iter 20 value 94.052926
final value 94.052914
converged
Fitting Repeat 2
# weights: 305
initial value 106.007435
iter 10 value 94.056890
iter 20 value 93.916249
iter 30 value 93.679945
iter 40 value 90.602673
iter 50 value 85.011807
iter 60 value 84.933767
iter 70 value 84.927628
iter 80 value 84.921228
iter 90 value 84.920517
iter 100 value 84.648911
final value 84.648911
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.282451
iter 10 value 93.921019
iter 20 value 93.904444
iter 30 value 90.830846
final value 90.669173
converged
Fitting Repeat 4
# weights: 305
initial value 102.604446
iter 10 value 94.057327
iter 20 value 93.906362
iter 30 value 92.893079
final value 92.893076
converged
Fitting Repeat 5
# weights: 305
initial value 105.716153
iter 10 value 93.944970
iter 20 value 93.769328
iter 30 value 90.077086
iter 40 value 89.478922
iter 50 value 89.475794
iter 60 value 88.258417
iter 70 value 87.864064
final value 87.832158
converged
Fitting Repeat 1
# weights: 507
initial value 116.934341
iter 10 value 94.055083
final value 94.054615
converged
Fitting Repeat 2
# weights: 507
initial value 105.649884
iter 10 value 94.025301
iter 20 value 93.827355
iter 30 value 86.854523
iter 40 value 86.304862
iter 50 value 85.022127
iter 60 value 84.307305
iter 70 value 84.064491
iter 80 value 84.054200
iter 90 value 84.005029
final value 84.005026
converged
Fitting Repeat 3
# weights: 507
initial value 108.994246
iter 10 value 94.060737
iter 20 value 94.053955
iter 30 value 93.986771
iter 40 value 93.537393
iter 50 value 93.522080
iter 60 value 93.521103
iter 70 value 93.520762
iter 80 value 93.358924
iter 90 value 92.854699
iter 100 value 84.805471
final value 84.805471
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.989125
iter 10 value 93.987171
iter 20 value 89.946212
iter 30 value 84.144146
iter 40 value 82.041909
iter 50 value 81.907076
iter 60 value 81.904363
final value 81.900841
converged
Fitting Repeat 5
# weights: 507
initial value 98.669266
iter 10 value 93.923986
iter 20 value 93.699239
iter 30 value 93.690586
iter 40 value 91.195984
iter 50 value 87.517722
iter 60 value 85.830318
iter 70 value 84.488834
iter 80 value 83.681829
iter 90 value 83.680920
iter 100 value 83.680825
final value 83.680825
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.200989
iter 10 value 94.491205
iter 20 value 94.476487
iter 30 value 86.076465
iter 40 value 85.951724
iter 40 value 85.951724
final value 85.951717
converged
Fitting Repeat 2
# weights: 103
initial value 95.202904
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.087005
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.581099
final value 94.484210
converged
Fitting Repeat 5
# weights: 103
initial value 101.603617
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 94.598348
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.511815
final value 94.291892
converged
Fitting Repeat 3
# weights: 305
initial value 97.177059
final value 94.291892
converged
Fitting Repeat 4
# weights: 305
initial value 101.285794
iter 10 value 94.291892
iter 10 value 94.291892
iter 10 value 94.291892
final value 94.291892
converged
Fitting Repeat 5
# weights: 305
initial value 107.839506
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 102.163842
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 110.691582
iter 10 value 93.348053
iter 20 value 92.725767
iter 30 value 92.557925
iter 40 value 92.209133
iter 50 value 92.199408
final value 92.199398
converged
Fitting Repeat 3
# weights: 507
initial value 123.581971
iter 10 value 94.291892
iter 10 value 94.291892
iter 10 value 94.291892
final value 94.291892
converged
Fitting Repeat 4
# weights: 507
initial value 95.451599
final value 94.291892
converged
Fitting Repeat 5
# weights: 507
initial value 99.573880
iter 10 value 92.494016
iter 20 value 81.598969
iter 30 value 79.302251
iter 40 value 79.105836
iter 50 value 79.083742
iter 60 value 79.083175
final value 79.083164
converged
Fitting Repeat 1
# weights: 103
initial value 104.572557
iter 10 value 84.570791
iter 20 value 83.590709
iter 30 value 82.950301
iter 40 value 82.922829
final value 82.922809
converged
Fitting Repeat 2
# weights: 103
initial value 99.742578
iter 10 value 94.822237
iter 20 value 94.485889
iter 30 value 89.352131
iter 40 value 85.384659
iter 50 value 82.183891
iter 60 value 82.094107
iter 70 value 81.571299
iter 80 value 80.742802
iter 90 value 80.066950
iter 100 value 80.004053
final value 80.004053
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.759133
iter 10 value 93.982857
iter 20 value 87.523731
iter 30 value 84.545892
iter 40 value 84.005347
iter 50 value 83.436204
iter 60 value 83.179708
iter 70 value 83.021340
iter 80 value 82.951889
iter 90 value 82.922809
iter 90 value 82.922809
iter 90 value 82.922809
final value 82.922809
converged
Fitting Repeat 4
# weights: 103
initial value 101.169501
iter 10 value 94.488737
iter 20 value 94.290752
iter 30 value 92.575418
iter 40 value 91.996498
iter 50 value 84.763965
iter 60 value 84.263092
iter 70 value 83.747319
iter 80 value 83.538960
iter 90 value 83.332062
iter 100 value 83.280660
final value 83.280660
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.636412
iter 10 value 94.490537
iter 20 value 94.274963
iter 30 value 89.484033
iter 40 value 85.845061
iter 50 value 85.153183
iter 60 value 84.768453
iter 70 value 81.362038
iter 80 value 80.792983
iter 90 value 80.251121
iter 100 value 80.241908
final value 80.241908
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.405112
iter 10 value 94.558421
iter 20 value 93.587860
iter 30 value 85.755995
iter 40 value 84.697444
iter 50 value 84.266013
iter 60 value 83.999655
iter 70 value 83.614637
iter 80 value 83.330106
iter 90 value 82.251433
iter 100 value 81.343336
final value 81.343336
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.073512
iter 10 value 94.221164
iter 20 value 89.384499
iter 30 value 88.135660
iter 40 value 87.798017
iter 50 value 85.492124
iter 60 value 85.030172
iter 70 value 83.565594
iter 80 value 83.386406
iter 90 value 83.055767
iter 100 value 82.726118
final value 82.726118
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 128.066380
iter 10 value 94.871074
iter 20 value 85.744943
iter 30 value 84.411918
iter 40 value 83.928845
iter 50 value 83.279958
iter 60 value 81.136344
iter 70 value 80.739681
iter 80 value 79.526773
iter 90 value 78.989392
iter 100 value 78.878695
final value 78.878695
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.290038
iter 10 value 94.546135
iter 20 value 94.289679
iter 30 value 94.162964
iter 40 value 85.388255
iter 50 value 80.779786
iter 60 value 80.263423
iter 70 value 79.522900
iter 80 value 79.321020
iter 90 value 79.181664
iter 100 value 79.107745
final value 79.107745
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.419476
iter 10 value 89.216877
iter 20 value 84.919913
iter 30 value 81.150255
iter 40 value 80.451269
iter 50 value 79.713737
iter 60 value 79.132745
iter 70 value 79.109868
iter 80 value 78.936628
iter 90 value 78.774362
iter 100 value 78.637893
final value 78.637893
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.083993
iter 10 value 94.358783
iter 20 value 85.538198
iter 30 value 83.702421
iter 40 value 80.909190
iter 50 value 79.379367
iter 60 value 79.149552
iter 70 value 79.039961
iter 80 value 78.980416
iter 90 value 78.884489
iter 100 value 78.620052
final value 78.620052
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.973755
iter 10 value 94.616559
iter 20 value 85.606422
iter 30 value 84.170019
iter 40 value 81.399895
iter 50 value 80.420114
iter 60 value 79.997516
iter 70 value 78.783659
iter 80 value 78.577603
iter 90 value 78.518187
iter 100 value 78.466875
final value 78.466875
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.558934
iter 10 value 94.607462
iter 20 value 87.166985
iter 30 value 85.502526
iter 40 value 81.643274
iter 50 value 80.479989
iter 60 value 80.247941
iter 70 value 80.053787
iter 80 value 79.897884
iter 90 value 79.447259
iter 100 value 78.968932
final value 78.968932
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.756265
iter 10 value 94.672879
iter 20 value 93.304815
iter 30 value 88.517865
iter 40 value 87.517288
iter 50 value 83.628887
iter 60 value 83.410629
iter 70 value 82.920912
iter 80 value 81.316509
iter 90 value 79.824218
iter 100 value 79.442807
final value 79.442807
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.201702
iter 10 value 94.638724
iter 20 value 94.474892
iter 30 value 93.336354
iter 40 value 84.323898
iter 50 value 81.902090
iter 60 value 81.247749
iter 70 value 79.439838
iter 80 value 78.999290
iter 90 value 78.538957
iter 100 value 78.459317
final value 78.459317
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.672640
iter 10 value 94.293577
iter 20 value 94.292998
iter 30 value 91.819962
iter 40 value 88.712937
iter 50 value 88.711867
iter 60 value 88.710408
final value 88.710339
converged
Fitting Repeat 2
# weights: 103
initial value 96.648058
iter 10 value 94.342914
iter 20 value 94.293712
iter 30 value 94.292283
final value 94.292083
converged
Fitting Repeat 3
# weights: 103
initial value 101.384769
final value 94.485850
converged
Fitting Repeat 4
# weights: 103
initial value 102.052939
final value 94.485892
converged
Fitting Repeat 5
# weights: 103
initial value 103.907635
iter 10 value 94.471896
final value 94.443443
converged
Fitting Repeat 1
# weights: 305
initial value 99.657642
iter 10 value 94.488516
iter 20 value 93.792312
iter 30 value 85.014545
iter 40 value 84.587157
final value 84.587130
converged
Fitting Repeat 2
# weights: 305
initial value 110.578932
iter 10 value 94.297375
iter 20 value 94.292724
final value 94.291974
converged
Fitting Repeat 3
# weights: 305
initial value 106.171558
iter 10 value 94.490971
iter 20 value 94.371013
iter 30 value 86.263437
iter 40 value 84.123400
iter 50 value 83.427351
iter 50 value 83.427350
final value 83.427350
converged
Fitting Repeat 4
# weights: 305
initial value 121.374307
iter 10 value 91.839942
iter 20 value 91.212925
iter 30 value 91.156720
iter 40 value 91.081828
iter 50 value 91.079627
final value 91.078825
converged
Fitting Repeat 5
# weights: 305
initial value 101.049546
iter 10 value 94.488898
iter 20 value 94.314227
iter 30 value 89.489143
final value 89.373294
converged
Fitting Repeat 1
# weights: 507
initial value 110.383199
iter 10 value 94.301250
iter 20 value 94.282561
iter 30 value 85.968236
iter 40 value 85.250480
iter 50 value 85.131914
iter 60 value 85.125334
iter 70 value 85.125019
final value 85.125018
converged
Fitting Repeat 2
# weights: 507
initial value 96.086610
iter 10 value 93.027285
iter 20 value 93.008774
iter 30 value 93.007233
final value 93.007111
converged
Fitting Repeat 3
# weights: 507
initial value 124.486899
iter 10 value 94.320396
iter 20 value 94.316683
iter 30 value 94.300469
iter 40 value 87.651002
iter 50 value 86.645355
iter 60 value 86.610030
iter 70 value 86.554109
final value 86.553509
converged
Fitting Repeat 4
# weights: 507
initial value 103.716672
iter 10 value 94.299803
iter 20 value 94.294683
iter 30 value 94.294347
iter 40 value 94.272168
iter 50 value 94.095505
iter 60 value 94.092023
iter 70 value 90.982441
final value 86.591645
converged
Fitting Repeat 5
# weights: 507
initial value 105.887019
iter 10 value 84.922286
iter 20 value 84.890436
iter 30 value 84.883625
iter 40 value 83.650440
iter 50 value 80.196211
iter 60 value 80.163764
iter 70 value 80.127637
iter 80 value 80.123531
iter 90 value 80.106460
iter 100 value 79.987428
final value 79.987428
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.620642
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.993952
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.568164
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.175450
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.105691
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.185945
final value 94.443244
converged
Fitting Repeat 2
# weights: 305
initial value 98.253164
iter 10 value 94.443244
iter 10 value 94.443243
iter 10 value 94.443243
final value 94.443243
converged
Fitting Repeat 3
# weights: 305
initial value 100.070570
iter 10 value 94.444102
iter 20 value 94.443247
final value 94.443244
converged
Fitting Repeat 4
# weights: 305
initial value 100.168137
iter 10 value 94.484235
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 107.169789
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.714305
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 102.500501
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 100.611257
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 119.847750
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.491044
final value 94.057142
converged
Fitting Repeat 1
# weights: 103
initial value 102.238804
iter 10 value 94.486440
iter 20 value 94.261036
iter 30 value 89.432543
iter 40 value 87.150150
iter 50 value 86.753078
iter 60 value 86.751358
final value 86.751353
converged
Fitting Repeat 2
# weights: 103
initial value 103.374831
iter 10 value 94.504684
iter 20 value 94.435092
iter 30 value 93.404341
iter 40 value 93.326320
iter 50 value 93.279035
iter 60 value 89.396947
iter 70 value 87.790190
iter 80 value 87.096914
iter 90 value 87.031666
iter 100 value 86.563380
final value 86.563380
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.436859
iter 10 value 94.484451
iter 20 value 94.002808
iter 30 value 93.663114
iter 40 value 87.884471
iter 50 value 87.237969
iter 60 value 87.153328
iter 70 value 86.956169
iter 80 value 86.752244
final value 86.751353
converged
Fitting Repeat 4
# weights: 103
initial value 103.132275
iter 10 value 94.491285
iter 20 value 94.488796
iter 30 value 94.481322
iter 40 value 92.515859
iter 50 value 88.226524
iter 60 value 86.802426
iter 70 value 86.583241
iter 80 value 86.281863
final value 86.281639
converged
Fitting Repeat 5
# weights: 103
initial value 103.667607
iter 10 value 94.488488
iter 20 value 94.469118
iter 30 value 92.392380
iter 40 value 87.827780
iter 50 value 86.377495
iter 60 value 85.518120
iter 70 value 85.055532
iter 80 value 83.843583
iter 90 value 83.710564
iter 100 value 83.663363
final value 83.663363
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 124.076151
iter 10 value 94.362992
iter 20 value 88.783986
iter 30 value 85.200210
iter 40 value 84.866759
iter 50 value 83.985637
iter 60 value 83.181644
iter 70 value 82.846764
iter 80 value 82.770986
iter 90 value 82.757196
iter 100 value 82.660618
final value 82.660618
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.511638
iter 10 value 88.889908
iter 20 value 85.748763
iter 30 value 85.376616
iter 40 value 85.032656
iter 50 value 84.975170
iter 60 value 84.942045
iter 70 value 84.502166
iter 80 value 83.863935
iter 90 value 83.632463
iter 100 value 83.338167
final value 83.338167
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.727117
iter 10 value 94.476422
iter 20 value 86.386635
iter 30 value 84.503569
iter 40 value 84.017376
iter 50 value 83.976893
iter 60 value 83.929400
iter 70 value 83.760312
iter 80 value 83.720387
iter 90 value 83.650188
iter 100 value 83.631304
final value 83.631304
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.667834
iter 10 value 94.394127
iter 20 value 90.576968
iter 30 value 87.299062
iter 40 value 86.223466
iter 50 value 85.034755
iter 60 value 84.249559
iter 70 value 83.549676
iter 80 value 83.397757
iter 90 value 83.392465
iter 100 value 83.391436
final value 83.391436
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.212347
iter 10 value 94.480695
iter 20 value 93.419692
iter 30 value 85.842935
iter 40 value 85.639569
iter 50 value 85.594139
iter 60 value 85.540529
iter 70 value 84.211247
iter 80 value 82.813124
iter 90 value 81.949904
iter 100 value 81.366963
final value 81.366963
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.777313
iter 10 value 96.543024
iter 20 value 91.409519
iter 30 value 89.262456
iter 40 value 87.129298
iter 50 value 86.477650
iter 60 value 83.962620
iter 70 value 83.285238
iter 80 value 82.978162
iter 90 value 82.887035
iter 100 value 82.821225
final value 82.821225
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.510016
iter 10 value 94.596579
iter 20 value 87.894313
iter 30 value 86.236204
iter 40 value 84.282524
iter 50 value 83.903651
iter 60 value 83.552441
iter 70 value 82.645586
iter 80 value 82.018086
iter 90 value 81.840108
iter 100 value 81.773629
final value 81.773629
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.691911
iter 10 value 94.269005
iter 20 value 89.649203
iter 30 value 87.518297
iter 40 value 86.313454
iter 50 value 86.125595
iter 60 value 85.457182
iter 70 value 85.093468
iter 80 value 84.906841
iter 90 value 84.584558
iter 100 value 84.016692
final value 84.016692
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 122.299574
iter 10 value 97.828160
iter 20 value 92.312713
iter 30 value 88.580656
iter 40 value 86.730649
iter 50 value 85.110814
iter 60 value 83.513493
iter 70 value 82.621611
iter 80 value 82.446539
iter 90 value 82.266425
iter 100 value 81.891396
final value 81.891396
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.650526
iter 10 value 94.413944
iter 20 value 87.778584
iter 30 value 86.838191
iter 40 value 84.999240
iter 50 value 83.574626
iter 60 value 82.691190
iter 70 value 82.164382
iter 80 value 81.969176
iter 90 value 81.575058
iter 100 value 81.289854
final value 81.289854
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.727990
iter 10 value 94.214442
iter 10 value 94.214441
iter 10 value 94.214441
final value 94.214441
converged
Fitting Repeat 2
# weights: 103
initial value 106.002187
iter 10 value 94.486229
final value 94.484269
converged
Fitting Repeat 3
# weights: 103
initial value 104.314172
final value 94.485586
converged
Fitting Repeat 4
# weights: 103
initial value 97.146449
final value 94.485950
converged
Fitting Repeat 5
# weights: 103
initial value 102.522017
iter 10 value 94.485743
iter 20 value 94.484216
iter 30 value 85.165644
iter 40 value 85.094000
iter 50 value 85.011191
final value 85.009884
converged
Fitting Repeat 1
# weights: 305
initial value 99.773160
iter 10 value 94.489247
iter 20 value 94.474921
iter 30 value 94.213257
iter 40 value 94.212916
final value 94.212899
converged
Fitting Repeat 2
# weights: 305
initial value 109.271569
iter 10 value 94.453912
iter 20 value 85.783063
iter 30 value 85.044293
final value 85.010517
converged
Fitting Repeat 3
# weights: 305
initial value 95.342539
iter 10 value 93.907650
iter 20 value 93.857922
iter 30 value 93.853308
iter 40 value 93.852063
iter 50 value 93.851956
final value 93.851913
converged
Fitting Repeat 4
# weights: 305
initial value 116.476129
iter 10 value 94.448507
iter 20 value 94.446995
final value 94.446170
converged
Fitting Repeat 5
# weights: 305
initial value 95.946431
iter 10 value 94.485089
iter 20 value 94.475111
iter 30 value 89.319222
iter 40 value 88.660054
iter 50 value 87.140417
iter 60 value 86.962432
iter 70 value 85.608244
iter 80 value 85.606921
iter 90 value 85.588625
iter 100 value 85.465505
final value 85.465505
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.705578
iter 10 value 94.212117
iter 20 value 94.204549
iter 30 value 94.203865
iter 40 value 94.203816
iter 40 value 94.203816
iter 40 value 94.203816
final value 94.203816
converged
Fitting Repeat 2
# weights: 507
initial value 96.824124
iter 10 value 92.520205
iter 20 value 91.404118
iter 30 value 91.364629
iter 40 value 91.363018
iter 50 value 86.594615
iter 60 value 85.921111
iter 70 value 85.629505
iter 80 value 85.605913
iter 90 value 85.604243
final value 85.604233
converged
Fitting Repeat 3
# weights: 507
initial value 100.853735
iter 10 value 94.498397
iter 20 value 94.267796
iter 30 value 88.655315
iter 40 value 84.525925
iter 50 value 84.484823
iter 60 value 84.319587
iter 70 value 83.610171
iter 80 value 83.464326
iter 90 value 83.462700
iter 100 value 83.435073
final value 83.435073
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 98.327542
iter 10 value 94.490541
iter 20 value 94.045669
iter 30 value 88.116071
iter 40 value 88.068593
iter 50 value 84.487971
iter 60 value 84.151573
final value 83.655671
converged
Fitting Repeat 5
# weights: 507
initial value 109.949783
iter 10 value 94.455019
iter 20 value 94.356193
iter 30 value 84.075015
iter 40 value 83.844327
final value 83.843835
converged
Fitting Repeat 1
# weights: 103
initial value 102.854106
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.201571
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.336705
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 112.289812
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.961216
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.960590
final value 94.484210
converged
Fitting Repeat 2
# weights: 305
initial value 102.883760
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 95.440380
iter 10 value 87.687622
iter 20 value 82.438861
iter 30 value 82.259611
iter 40 value 80.928862
final value 80.841615
converged
Fitting Repeat 4
# weights: 305
initial value 95.302308
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 104.074050
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.970858
iter 10 value 94.354545
final value 94.354396
converged
Fitting Repeat 2
# weights: 507
initial value 101.386649
final value 94.322897
converged
Fitting Repeat 3
# weights: 507
initial value 107.232975
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 99.119283
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 112.967438
iter 10 value 94.405566
final value 94.322898
converged
Fitting Repeat 1
# weights: 103
initial value 101.116968
iter 10 value 93.884905
iter 20 value 92.903607
iter 30 value 87.010290
iter 40 value 85.735010
iter 50 value 84.381454
iter 60 value 82.176201
iter 70 value 81.219583
iter 80 value 80.062525
iter 90 value 80.018621
iter 90 value 80.018621
iter 90 value 80.018621
final value 80.018621
converged
Fitting Repeat 2
# weights: 103
initial value 109.761710
iter 10 value 94.463418
iter 20 value 85.798024
iter 30 value 84.665996
iter 40 value 84.623309
iter 50 value 83.856844
iter 60 value 82.931259
iter 70 value 82.854918
iter 80 value 82.847069
final value 82.847066
converged
Fitting Repeat 3
# weights: 103
initial value 98.814493
iter 10 value 94.461621
iter 20 value 88.653721
iter 30 value 85.043783
iter 40 value 84.574884
iter 50 value 84.046568
iter 60 value 83.343195
iter 70 value 83.301214
final value 83.301075
converged
Fitting Repeat 4
# weights: 103
initial value 98.863199
iter 10 value 93.848298
iter 20 value 92.061286
iter 30 value 84.784976
iter 40 value 84.205336
iter 50 value 83.476142
iter 60 value 83.349456
iter 70 value 82.292906
final value 82.287707
converged
Fitting Repeat 5
# weights: 103
initial value 115.398937
iter 10 value 94.491855
iter 20 value 94.057395
iter 30 value 91.590767
iter 40 value 90.521564
iter 50 value 87.384839
iter 60 value 83.635089
iter 70 value 83.095615
iter 80 value 82.813963
iter 90 value 82.657266
final value 82.657045
converged
Fitting Repeat 1
# weights: 305
initial value 102.965799
iter 10 value 94.581683
iter 20 value 94.490117
iter 30 value 88.132252
iter 40 value 81.786967
iter 50 value 79.708875
iter 60 value 79.266828
iter 70 value 78.937220
iter 80 value 78.821786
iter 90 value 78.731306
iter 100 value 78.717800
final value 78.717800
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.872313
iter 10 value 94.341494
iter 20 value 85.445674
iter 30 value 84.407375
iter 40 value 83.128048
iter 50 value 83.063649
iter 60 value 82.978308
iter 70 value 82.613955
iter 80 value 81.125525
iter 90 value 80.029049
iter 100 value 79.847210
final value 79.847210
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.256683
iter 10 value 95.009559
iter 20 value 90.293367
iter 30 value 89.437963
iter 40 value 85.959781
iter 50 value 84.397170
iter 60 value 83.667310
iter 70 value 83.440125
iter 80 value 82.744739
iter 90 value 81.673917
iter 100 value 80.201019
final value 80.201019
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.132073
iter 10 value 94.409303
iter 20 value 92.594351
iter 30 value 91.532865
iter 40 value 87.140752
iter 50 value 83.000596
iter 60 value 82.420581
iter 70 value 82.238883
iter 80 value 82.165662
iter 90 value 80.988000
iter 100 value 80.939278
final value 80.939278
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.695233
iter 10 value 94.019683
iter 20 value 85.860909
iter 30 value 84.839282
iter 40 value 83.324060
iter 50 value 83.073672
iter 60 value 83.048702
iter 70 value 82.549416
iter 80 value 81.283511
iter 90 value 79.246986
iter 100 value 78.788201
final value 78.788201
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.034835
iter 10 value 95.367636
iter 20 value 89.535630
iter 30 value 85.766015
iter 40 value 82.415501
iter 50 value 81.828277
iter 60 value 81.507614
iter 70 value 80.908073
iter 80 value 79.883161
iter 90 value 79.706333
iter 100 value 79.360025
final value 79.360025
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.393102
iter 10 value 96.910167
iter 20 value 92.702123
iter 30 value 83.920795
iter 40 value 82.968332
iter 50 value 81.627920
iter 60 value 80.522810
iter 70 value 79.351023
iter 80 value 78.520647
iter 90 value 78.394143
iter 100 value 78.327799
final value 78.327799
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.083106
iter 10 value 94.473218
iter 20 value 86.726871
iter 30 value 81.706318
iter 40 value 80.253054
iter 50 value 79.045547
iter 60 value 78.855392
iter 70 value 78.284318
iter 80 value 78.194598
iter 90 value 78.041209
iter 100 value 78.002166
final value 78.002166
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.268514
iter 10 value 94.514473
iter 20 value 83.929710
iter 30 value 81.810555
iter 40 value 81.186281
iter 50 value 80.855173
iter 60 value 80.050940
iter 70 value 79.161551
iter 80 value 78.951560
iter 90 value 78.919350
iter 100 value 78.619155
final value 78.619155
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.883494
iter 10 value 96.525842
iter 20 value 87.810758
iter 30 value 87.109832
iter 40 value 84.292689
iter 50 value 83.966507
iter 60 value 83.676326
iter 70 value 83.412211
iter 80 value 83.125631
iter 90 value 82.657463
iter 100 value 81.592515
final value 81.592515
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.709465
final value 94.355792
converged
Fitting Repeat 2
# weights: 103
initial value 96.440916
final value 94.485818
converged
Fitting Repeat 3
# weights: 103
initial value 98.281301
iter 10 value 94.486063
iter 20 value 94.485789
iter 20 value 94.485789
iter 20 value 94.485789
final value 94.485789
converged
Fitting Repeat 4
# weights: 103
initial value 100.393834
final value 94.486192
converged
Fitting Repeat 5
# weights: 103
initial value 95.023017
final value 94.485989
converged
Fitting Repeat 1
# weights: 305
initial value 97.574598
iter 10 value 94.486239
final value 94.484433
converged
Fitting Repeat 2
# weights: 305
initial value 97.593776
iter 10 value 94.489074
iter 20 value 93.150046
iter 30 value 91.726779
iter 40 value 91.581079
iter 50 value 91.531092
final value 91.529576
converged
Fitting Repeat 3
# weights: 305
initial value 107.175103
iter 10 value 94.489301
iter 20 value 94.370649
final value 94.354465
converged
Fitting Repeat 4
# weights: 305
initial value 125.063108
iter 10 value 94.358833
iter 20 value 93.734169
iter 30 value 87.366596
iter 40 value 83.524454
iter 50 value 83.443723
iter 60 value 83.441179
final value 83.441017
converged
Fitting Repeat 5
# weights: 305
initial value 101.007650
iter 10 value 94.488428
iter 20 value 94.484313
iter 30 value 84.735800
iter 40 value 81.569613
final value 80.551648
converged
Fitting Repeat 1
# weights: 507
initial value 105.540498
iter 10 value 92.820644
iter 20 value 85.821340
iter 30 value 82.929507
iter 40 value 81.531696
iter 50 value 81.379958
iter 60 value 81.332091
final value 81.331179
converged
Fitting Repeat 2
# weights: 507
initial value 96.332196
iter 10 value 94.489614
iter 20 value 92.343100
iter 30 value 84.229029
iter 40 value 84.195891
iter 50 value 84.191076
iter 60 value 82.360668
iter 70 value 78.967357
iter 80 value 78.945646
iter 90 value 78.944708
iter 100 value 78.893638
final value 78.893638
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.314485
iter 10 value 94.158740
iter 20 value 92.413663
iter 30 value 91.388449
iter 40 value 82.443171
iter 50 value 81.665451
iter 60 value 81.516503
iter 70 value 81.430915
iter 80 value 81.366587
iter 90 value 81.365589
iter 100 value 81.362549
final value 81.362549
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.433990
iter 10 value 87.386311
iter 20 value 87.221759
iter 30 value 86.555516
final value 86.553129
converged
Fitting Repeat 5
# weights: 507
initial value 102.151979
iter 10 value 94.490861
iter 20 value 93.828622
iter 30 value 86.748818
iter 40 value 83.998811
iter 50 value 83.830686
iter 60 value 83.250955
iter 70 value 82.071213
iter 80 value 81.589923
iter 90 value 81.446939
final value 81.441104
converged
Fitting Repeat 1
# weights: 507
initial value 124.166899
iter 10 value 112.622190
iter 20 value 110.337973
iter 30 value 106.498927
iter 40 value 105.831518
iter 50 value 105.829723
iter 60 value 105.797530
iter 70 value 105.784046
iter 80 value 105.783309
final value 105.783264
converged
Fitting Repeat 2
# weights: 507
initial value 120.551287
iter 10 value 117.766185
final value 117.764253
converged
Fitting Repeat 3
# weights: 507
initial value 120.350482
iter 10 value 117.738824
iter 20 value 117.732320
iter 30 value 107.058340
iter 40 value 106.974370
iter 50 value 104.629655
iter 60 value 101.669838
iter 70 value 101.220283
iter 80 value 101.212012
iter 90 value 101.121540
iter 100 value 100.999645
final value 100.999645
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 123.221058
iter 10 value 117.852575
iter 20 value 117.766895
iter 30 value 117.758892
iter 40 value 116.445043
iter 50 value 106.088595
iter 60 value 105.514230
iter 70 value 105.510258
final value 105.508083
converged
Fitting Repeat 5
# weights: 507
initial value 152.085273
iter 10 value 117.898662
iter 20 value 117.891013
iter 30 value 106.912560
final value 106.903183
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sat May 2 01:21:33 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.605 1.162 107.312
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 34.341 | 0.493 | 34.911 | |
| FreqInteractors | 0.446 | 0.033 | 0.479 | |
| calculateAAC | 0.036 | 0.001 | 0.037 | |
| calculateAutocor | 0.270 | 0.020 | 0.292 | |
| calculateCTDC | 0.077 | 0.001 | 0.078 | |
| calculateCTDD | 0.51 | 0.00 | 0.51 | |
| calculateCTDT | 0.135 | 0.001 | 0.136 | |
| calculateCTriad | 0.386 | 0.006 | 0.392 | |
| calculateDC | 0.081 | 0.008 | 0.089 | |
| calculateF | 0.297 | 0.001 | 0.298 | |
| calculateKSAAP | 0.096 | 0.005 | 0.101 | |
| calculateQD_Sm | 1.760 | 0.023 | 1.782 | |
| calculateTC | 1.540 | 0.138 | 1.679 | |
| calculateTC_Sm | 0.299 | 0.005 | 0.303 | |
| corr_plot | 34.536 | 0.469 | 35.110 | |
| enrichfindP | 0.62 | 0.04 | 15.43 | |
| enrichfind_hp | 0.064 | 0.002 | 1.006 | |
| enrichplot | 0.547 | 0.029 | 0.576 | |
| filter_missing_values | 0.002 | 0.001 | 0.002 | |
| getFASTA | 0.429 | 0.016 | 3.840 | |
| getHPI | 0.000 | 0.002 | 0.003 | |
| get_negativePPI | 0.003 | 0.001 | 0.004 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.004 | 0.000 | 0.004 | |
| plotPPI | 0.090 | 0.009 | 0.099 | |
| pred_ensembel | 13.050 | 0.298 | 12.008 | |
| var_imp | 35.773 | 0.593 | 36.406 | |