| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-23 11:40 -0400 (Thu, 23 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4783 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4701 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1023/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-22 20:15:28 -0400 (Wed, 22 Apr 2026) |
| EndedAt: 2026-04-22 20:18:50 -0400 (Wed, 22 Apr 2026) |
| EllapsedTime: 201.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-23 00:15:29 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 17.106 0.175 18.127
var_imp 17.104 0.157 17.413
corr_plot 17.069 0.125 17.242
pred_ensembel 6.261 0.149 5.715
enrichfindP 0.198 0.033 10.650
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.161039
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.943596
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.113584
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 106.682325
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 108.906808
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 116.230318
iter 10 value 94.043640
final value 94.043244
converged
Fitting Repeat 2
# weights: 305
initial value 96.855038
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.902465
final value 93.991525
converged
Fitting Repeat 4
# weights: 305
initial value 110.549632
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 98.937189
final value 94.032967
converged
Fitting Repeat 1
# weights: 507
initial value 97.574349
iter 10 value 93.886935
iter 20 value 93.784838
final value 93.782052
converged
Fitting Repeat 2
# weights: 507
initial value 96.036714
iter 10 value 93.543987
iter 20 value 93.413904
iter 20 value 93.413903
final value 93.413859
converged
Fitting Repeat 3
# weights: 507
initial value 100.742389
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 95.320647
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 108.853997
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 100.521313
iter 10 value 94.218826
iter 20 value 94.045172
iter 30 value 90.021044
iter 40 value 85.905301
iter 50 value 84.715951
iter 60 value 84.250491
iter 70 value 84.052388
iter 80 value 83.836061
iter 90 value 83.739296
final value 83.738515
converged
Fitting Repeat 2
# weights: 103
initial value 107.406357
iter 10 value 94.054952
iter 20 value 86.691822
iter 30 value 85.568089
iter 40 value 85.316114
iter 50 value 84.310297
iter 60 value 83.996683
iter 70 value 83.925238
iter 80 value 83.867501
final value 83.867496
converged
Fitting Repeat 3
# weights: 103
initial value 107.441338
iter 10 value 94.055261
iter 20 value 93.840808
iter 30 value 93.826708
iter 40 value 93.820761
iter 50 value 93.816567
iter 60 value 90.253547
iter 70 value 89.029862
iter 80 value 85.944324
iter 90 value 85.777036
iter 100 value 85.753002
final value 85.753002
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.393771
iter 10 value 94.056694
iter 20 value 93.891490
iter 30 value 86.922890
iter 40 value 86.030652
iter 50 value 84.092301
iter 60 value 83.557988
iter 70 value 83.514926
iter 80 value 83.389188
iter 90 value 83.350245
final value 83.350214
converged
Fitting Repeat 5
# weights: 103
initial value 109.604739
iter 10 value 93.732294
iter 20 value 86.526447
iter 30 value 85.487624
iter 40 value 85.339723
iter 50 value 85.189913
iter 60 value 85.024146
iter 70 value 84.979203
final value 84.976179
converged
Fitting Repeat 1
# weights: 305
initial value 116.309872
iter 10 value 94.173501
iter 20 value 91.775512
iter 30 value 90.178700
iter 40 value 89.395237
iter 50 value 87.621630
iter 60 value 86.360122
iter 70 value 85.784393
iter 80 value 84.948946
iter 90 value 83.118707
iter 100 value 82.750684
final value 82.750684
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.541140
iter 10 value 94.050753
iter 20 value 93.608483
iter 30 value 86.550516
iter 40 value 83.770575
iter 50 value 83.274286
iter 60 value 82.789512
iter 70 value 81.921953
iter 80 value 81.207619
iter 90 value 80.885529
iter 100 value 80.874503
final value 80.874503
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.177565
iter 10 value 94.118044
iter 20 value 94.026295
iter 30 value 90.728680
iter 40 value 86.289607
iter 50 value 84.878018
iter 60 value 84.122904
iter 70 value 83.191560
iter 80 value 82.313752
iter 90 value 81.821627
iter 100 value 81.128832
final value 81.128832
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 119.698083
iter 10 value 93.878459
iter 20 value 90.197743
iter 30 value 86.699773
iter 40 value 84.705600
iter 50 value 83.331198
iter 60 value 82.663645
iter 70 value 82.591455
iter 80 value 82.495746
iter 90 value 82.001174
iter 100 value 81.263468
final value 81.263468
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.226092
iter 10 value 94.070675
iter 20 value 94.011788
iter 30 value 86.984303
iter 40 value 86.155783
iter 50 value 85.280534
iter 60 value 85.018443
iter 70 value 83.932809
iter 80 value 83.439042
iter 90 value 83.402889
iter 100 value 83.354327
final value 83.354327
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.307706
iter 10 value 94.094297
iter 20 value 92.506150
iter 30 value 86.664247
iter 40 value 86.030286
iter 50 value 83.276878
iter 60 value 82.672775
iter 70 value 81.508323
iter 80 value 81.366925
iter 90 value 81.165610
iter 100 value 80.977201
final value 80.977201
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.777722
iter 10 value 94.817647
iter 20 value 92.699415
iter 30 value 85.025014
iter 40 value 83.055082
iter 50 value 82.027052
iter 60 value 81.649663
iter 70 value 81.306217
iter 80 value 81.216453
iter 90 value 81.167857
iter 100 value 81.154751
final value 81.154751
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.994281
iter 10 value 93.983815
iter 20 value 88.987506
iter 30 value 86.503708
iter 40 value 83.997427
iter 50 value 82.625640
iter 60 value 81.887206
iter 70 value 81.498280
iter 80 value 81.271753
iter 90 value 80.984421
iter 100 value 80.767267
final value 80.767267
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.179740
iter 10 value 94.160095
iter 20 value 94.063141
iter 30 value 91.153115
iter 40 value 85.099573
iter 50 value 84.197827
iter 60 value 83.550868
iter 70 value 82.287408
iter 80 value 81.857141
iter 90 value 81.415439
iter 100 value 80.968953
final value 80.968953
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.457560
iter 10 value 96.817417
iter 20 value 87.804437
iter 30 value 85.869050
iter 40 value 83.516460
iter 50 value 82.366804
iter 60 value 81.931764
iter 70 value 81.849563
iter 80 value 81.450032
iter 90 value 81.187624
iter 100 value 81.082098
final value 81.082098
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.170248
iter 10 value 94.034672
iter 20 value 93.955967
iter 30 value 85.128752
iter 40 value 84.946028
iter 50 value 84.937689
iter 60 value 84.934879
iter 70 value 84.934653
iter 80 value 84.934012
iter 90 value 84.933206
iter 100 value 84.932937
final value 84.932937
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 95.973552
final value 94.054381
converged
Fitting Repeat 3
# weights: 103
initial value 109.219852
final value 94.054955
converged
Fitting Repeat 4
# weights: 103
initial value 99.736619
iter 10 value 93.970817
iter 20 value 93.969584
iter 30 value 93.967896
final value 93.967868
converged
Fitting Repeat 5
# weights: 103
initial value 99.275097
final value 94.054461
converged
Fitting Repeat 1
# weights: 305
initial value 95.614761
iter 10 value 94.057494
iter 20 value 93.975890
iter 30 value 93.805378
iter 40 value 93.804968
iter 50 value 93.794349
final value 93.792136
converged
Fitting Repeat 2
# weights: 305
initial value 102.032653
iter 10 value 84.659942
iter 20 value 84.063780
iter 20 value 84.063780
final value 84.063780
converged
Fitting Repeat 3
# weights: 305
initial value 99.480100
iter 10 value 94.057713
iter 20 value 94.052092
iter 30 value 87.976679
iter 40 value 84.947280
iter 50 value 84.148511
final value 84.146801
converged
Fitting Repeat 4
# weights: 305
initial value 97.806458
iter 10 value 94.057458
iter 20 value 94.052951
final value 94.052914
converged
Fitting Repeat 5
# weights: 305
initial value 95.701922
iter 10 value 94.057315
iter 20 value 88.081439
iter 30 value 85.860152
iter 40 value 85.841083
final value 85.841045
converged
Fitting Repeat 1
# weights: 507
initial value 100.481397
iter 10 value 94.061363
iter 20 value 94.038018
iter 30 value 91.052970
iter 40 value 87.433208
iter 50 value 87.391086
iter 60 value 87.380836
iter 70 value 86.273245
iter 80 value 86.195858
iter 90 value 86.189961
iter 90 value 86.189961
final value 86.189961
converged
Fitting Repeat 2
# weights: 507
initial value 105.147847
iter 10 value 93.889647
iter 20 value 93.815473
iter 30 value 93.789508
iter 40 value 93.786371
iter 50 value 93.740600
iter 60 value 88.714680
iter 70 value 84.773667
iter 80 value 82.702500
iter 90 value 82.244159
iter 100 value 82.242699
final value 82.242699
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.449813
iter 10 value 93.812813
iter 20 value 93.798636
iter 30 value 93.794578
iter 40 value 93.794209
iter 50 value 93.735434
iter 60 value 93.734506
iter 70 value 93.734400
iter 80 value 93.734171
iter 80 value 93.734171
iter 80 value 93.734171
final value 93.734171
converged
Fitting Repeat 4
# weights: 507
initial value 104.788007
iter 10 value 94.060737
iter 20 value 94.042875
iter 30 value 94.039687
iter 40 value 93.983040
iter 50 value 87.383833
iter 60 value 87.376941
iter 70 value 86.176721
final value 86.174375
converged
Fitting Repeat 5
# weights: 507
initial value 105.433165
iter 10 value 94.060943
iter 20 value 94.053661
iter 30 value 93.636039
iter 40 value 87.374840
final value 87.374837
converged
Fitting Repeat 1
# weights: 103
initial value 101.709352
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 101.034922
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.253512
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.053084
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.215203
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.916877
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 103.204078
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 106.156137
iter 10 value 94.479532
iter 10 value 94.479532
iter 10 value 94.479532
final value 94.479532
converged
Fitting Repeat 4
# weights: 305
initial value 97.254310
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 104.434076
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.623839
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 108.960472
iter 10 value 92.021328
iter 20 value 89.844558
iter 30 value 89.842140
iter 40 value 89.835855
final value 89.835831
converged
Fitting Repeat 3
# weights: 507
initial value 108.285178
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.540344
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 113.719260
iter 10 value 94.466827
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 97.395197
iter 10 value 94.118065
iter 20 value 86.590119
iter 30 value 85.883814
iter 40 value 85.069906
iter 50 value 85.031942
iter 60 value 84.492917
final value 84.491879
converged
Fitting Repeat 2
# weights: 103
initial value 102.307041
iter 10 value 96.499017
iter 20 value 94.488611
iter 30 value 93.279922
iter 40 value 91.810057
iter 50 value 91.001006
iter 60 value 90.946133
iter 70 value 90.819952
iter 80 value 90.750060
iter 90 value 90.745783
final value 90.745779
converged
Fitting Repeat 3
# weights: 103
initial value 97.014336
iter 10 value 94.483910
iter 20 value 89.712979
iter 30 value 87.751662
iter 40 value 85.527013
iter 50 value 84.649395
iter 60 value 84.497432
iter 70 value 84.491958
final value 84.491877
converged
Fitting Repeat 4
# weights: 103
initial value 97.181315
iter 10 value 94.488087
iter 20 value 93.860804
iter 30 value 87.242505
iter 40 value 85.538143
iter 50 value 85.112578
iter 60 value 84.626878
iter 70 value 84.524263
iter 80 value 84.492007
final value 84.491877
converged
Fitting Repeat 5
# weights: 103
initial value 99.232077
iter 10 value 94.331991
iter 20 value 89.923819
iter 30 value 87.670607
iter 40 value 85.887732
iter 50 value 84.158041
iter 60 value 83.595672
iter 70 value 83.289314
iter 80 value 83.191840
iter 90 value 83.126908
final value 83.126904
converged
Fitting Repeat 1
# weights: 305
initial value 108.781914
iter 10 value 93.768078
iter 20 value 86.711896
iter 30 value 85.836188
iter 40 value 85.104012
iter 50 value 85.031289
iter 60 value 83.810286
iter 70 value 83.325796
final value 83.203662
converged
Fitting Repeat 2
# weights: 305
initial value 103.010544
iter 10 value 94.398905
iter 20 value 89.868318
iter 30 value 87.091185
iter 40 value 85.350569
iter 50 value 84.865622
iter 60 value 84.328258
iter 70 value 83.866431
iter 80 value 82.974512
iter 90 value 82.835462
iter 100 value 82.677709
final value 82.677709
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.367510
iter 10 value 92.489614
iter 20 value 88.155350
iter 30 value 86.317328
iter 40 value 84.461083
iter 50 value 84.210971
iter 60 value 83.369489
iter 70 value 81.083409
iter 80 value 80.646494
iter 90 value 80.489906
iter 100 value 80.206378
final value 80.206378
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.811319
iter 10 value 94.463759
iter 20 value 88.819963
iter 30 value 85.903928
iter 40 value 84.271983
iter 50 value 83.951398
iter 60 value 83.814339
iter 70 value 83.429722
iter 80 value 83.226040
iter 90 value 82.231389
iter 100 value 81.148335
final value 81.148335
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.801929
iter 10 value 94.972039
iter 20 value 94.482601
iter 30 value 94.182881
iter 40 value 92.550969
iter 50 value 86.752448
iter 60 value 84.055717
iter 70 value 81.767428
iter 80 value 81.032899
iter 90 value 80.876406
iter 100 value 80.755145
final value 80.755145
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.333510
iter 10 value 90.844253
iter 20 value 87.389288
iter 30 value 83.429411
iter 40 value 81.849313
iter 50 value 80.950477
iter 60 value 80.682846
iter 70 value 80.465885
iter 80 value 80.374443
iter 90 value 80.324440
iter 100 value 80.259281
final value 80.259281
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.122542
iter 10 value 94.747989
iter 20 value 94.409251
iter 30 value 93.709686
iter 40 value 84.701143
iter 50 value 84.469813
iter 60 value 83.303065
iter 70 value 83.090071
iter 80 value 82.960318
iter 90 value 82.732456
iter 100 value 82.222395
final value 82.222395
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.452914
iter 10 value 94.557507
iter 20 value 93.488331
iter 30 value 88.467477
iter 40 value 85.506374
iter 50 value 84.388837
iter 60 value 83.110174
iter 70 value 81.553603
iter 80 value 81.065619
iter 90 value 80.718896
iter 100 value 80.605034
final value 80.605034
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.654448
iter 10 value 96.188526
iter 20 value 89.697320
iter 30 value 86.881909
iter 40 value 85.120226
iter 50 value 84.691436
iter 60 value 84.251970
iter 70 value 84.158122
iter 80 value 84.134949
iter 90 value 83.827715
iter 100 value 82.176311
final value 82.176311
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.053433
iter 10 value 94.609782
iter 20 value 86.526458
iter 30 value 85.078479
iter 40 value 82.164158
iter 50 value 81.642101
iter 60 value 81.503010
iter 70 value 81.342480
iter 80 value 80.919216
iter 90 value 80.438854
iter 100 value 80.342161
final value 80.342161
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.687747
final value 94.485544
converged
Fitting Repeat 2
# weights: 103
initial value 107.599134
final value 94.485765
converged
Fitting Repeat 3
# weights: 103
initial value 98.586457
final value 94.485893
converged
Fitting Repeat 4
# weights: 103
initial value 107.928174
final value 94.485630
converged
Fitting Repeat 5
# weights: 103
initial value 101.886188
iter 10 value 94.485877
iter 20 value 93.073857
iter 30 value 88.938432
iter 40 value 88.923404
iter 50 value 86.540436
iter 60 value 86.458740
iter 70 value 85.400135
iter 80 value 85.391981
final value 85.388156
converged
Fitting Repeat 1
# weights: 305
initial value 114.351211
iter 10 value 90.247812
iter 20 value 86.282373
iter 30 value 86.227683
iter 40 value 86.196006
iter 50 value 84.614847
iter 60 value 84.579849
iter 70 value 84.499032
iter 80 value 82.544119
iter 90 value 82.467742
iter 100 value 82.466926
final value 82.466926
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.912198
iter 10 value 93.697250
iter 20 value 93.697053
iter 30 value 92.738978
iter 40 value 91.810369
iter 50 value 91.560664
iter 60 value 91.545256
final value 91.545060
converged
Fitting Repeat 3
# weights: 305
initial value 97.972819
iter 10 value 94.488881
iter 20 value 93.790488
iter 30 value 89.467802
final value 89.425804
converged
Fitting Repeat 4
# weights: 305
initial value 95.972655
iter 10 value 94.488491
iter 20 value 87.279998
iter 30 value 86.336617
iter 40 value 86.335655
iter 50 value 85.995899
iter 60 value 85.990626
iter 70 value 85.965627
iter 80 value 85.946565
final value 85.946517
converged
Fitting Repeat 5
# weights: 305
initial value 94.572192
iter 10 value 94.488848
final value 94.484199
converged
Fitting Repeat 1
# weights: 507
initial value 98.629592
iter 10 value 94.475905
iter 20 value 88.999674
iter 30 value 87.227748
iter 40 value 84.658903
iter 50 value 84.656867
iter 60 value 84.656364
iter 70 value 84.369991
iter 80 value 84.364573
iter 90 value 84.167322
iter 100 value 83.370922
final value 83.370922
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.909445
iter 10 value 94.463631
iter 20 value 94.432786
iter 30 value 94.395838
iter 40 value 84.774501
iter 50 value 84.400990
iter 60 value 84.366415
iter 70 value 84.356645
iter 80 value 84.355377
iter 90 value 84.354682
iter 100 value 84.354630
final value 84.354630
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.996638
iter 10 value 94.475246
iter 20 value 94.177781
iter 30 value 86.319851
iter 40 value 85.530377
iter 50 value 84.267337
iter 60 value 84.118876
iter 70 value 84.117704
final value 84.117702
converged
Fitting Repeat 4
# weights: 507
initial value 95.722681
iter 10 value 94.475138
iter 20 value 94.421183
iter 30 value 91.985318
iter 40 value 91.980290
iter 50 value 84.445310
iter 60 value 84.360514
iter 70 value 84.056555
iter 80 value 84.015614
iter 90 value 84.009534
iter 100 value 83.750660
final value 83.750660
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.297239
iter 10 value 94.490788
iter 20 value 93.431841
iter 30 value 85.525304
iter 40 value 84.401040
iter 50 value 83.793098
iter 60 value 83.216304
iter 70 value 82.754961
iter 80 value 82.709930
iter 90 value 82.427494
iter 100 value 80.784708
final value 80.784708
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.294067
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.937536
final value 93.701657
converged
Fitting Repeat 3
# weights: 103
initial value 95.234487
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 105.554111
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.907871
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.219473
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.551105
iter 10 value 93.683610
iter 20 value 93.431371
iter 30 value 93.428563
iter 40 value 93.427741
final value 93.427739
converged
Fitting Repeat 3
# weights: 305
initial value 104.139511
iter 10 value 90.859667
iter 20 value 86.886925
iter 30 value 86.729178
iter 40 value 86.728693
iter 40 value 86.728693
iter 40 value 86.728693
final value 86.728693
converged
Fitting Repeat 4
# weights: 305
initial value 105.960961
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 100.631428
iter 10 value 92.110886
iter 20 value 91.868459
iter 30 value 91.853294
final value 91.853281
converged
Fitting Repeat 1
# weights: 507
initial value 103.996347
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 109.435259
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 106.750394
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 103.013426
iter 10 value 93.692955
final value 93.692939
converged
Fitting Repeat 5
# weights: 507
initial value 100.122125
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 108.878017
iter 10 value 94.172982
iter 20 value 87.793050
iter 30 value 86.601341
iter 40 value 85.902398
iter 50 value 85.572804
final value 85.564024
converged
Fitting Repeat 2
# weights: 103
initial value 100.317940
iter 10 value 94.493051
iter 20 value 94.422472
iter 30 value 90.117193
iter 40 value 88.409867
iter 50 value 88.279410
iter 60 value 87.866039
iter 70 value 85.652486
iter 80 value 85.567029
final value 85.564024
converged
Fitting Repeat 3
# weights: 103
initial value 98.043086
iter 10 value 94.486086
iter 20 value 86.963062
iter 30 value 85.903517
iter 40 value 85.710939
iter 50 value 85.585678
iter 60 value 85.564035
final value 85.564024
converged
Fitting Repeat 4
# weights: 103
initial value 104.922054
iter 10 value 94.206049
iter 20 value 89.556065
iter 30 value 89.372553
iter 40 value 89.195412
iter 50 value 88.170656
iter 60 value 86.118171
iter 70 value 85.794356
iter 80 value 85.591354
iter 90 value 85.538175
iter 90 value 85.538174
iter 90 value 85.538174
final value 85.538174
converged
Fitting Repeat 5
# weights: 103
initial value 104.283871
iter 10 value 94.273358
iter 20 value 86.557807
iter 30 value 85.671102
iter 40 value 85.272245
iter 50 value 85.170680
final value 85.170654
converged
Fitting Repeat 1
# weights: 305
initial value 120.041481
iter 10 value 94.502751
iter 20 value 89.741611
iter 30 value 86.707099
iter 40 value 85.647815
iter 50 value 85.091940
iter 60 value 84.951761
iter 70 value 83.758592
iter 80 value 82.557569
iter 90 value 82.378799
iter 100 value 82.105309
final value 82.105309
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.579768
iter 10 value 94.497562
iter 20 value 87.852608
iter 30 value 86.696602
iter 40 value 85.750993
iter 50 value 85.400939
iter 60 value 85.162418
iter 70 value 85.081197
iter 80 value 84.980245
iter 90 value 84.779638
iter 100 value 82.760308
final value 82.760308
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.873715
iter 10 value 95.062590
iter 20 value 92.484257
iter 30 value 90.636922
iter 40 value 89.670313
iter 50 value 89.128079
iter 60 value 88.798820
iter 70 value 85.318289
iter 80 value 84.638140
iter 90 value 84.404954
iter 100 value 83.718509
final value 83.718509
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.094163
iter 10 value 94.385305
iter 20 value 87.872807
iter 30 value 86.946602
iter 40 value 85.948066
iter 50 value 85.545599
iter 60 value 85.384341
iter 70 value 85.342671
iter 80 value 84.813732
iter 90 value 84.436459
iter 100 value 84.128498
final value 84.128498
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.068115
iter 10 value 94.828195
iter 20 value 94.503869
iter 30 value 93.811364
iter 40 value 89.389787
iter 50 value 86.915065
iter 60 value 86.722140
iter 70 value 85.894433
iter 80 value 83.937578
iter 90 value 82.913298
iter 100 value 82.328049
final value 82.328049
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.297694
iter 10 value 97.461270
iter 20 value 89.800269
iter 30 value 86.911519
iter 40 value 86.090359
iter 50 value 84.402165
iter 60 value 83.839960
iter 70 value 83.738312
iter 80 value 83.282444
iter 90 value 82.672899
iter 100 value 82.371677
final value 82.371677
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.315459
iter 10 value 94.545162
iter 20 value 86.849295
iter 30 value 86.434337
iter 40 value 85.541269
iter 50 value 84.147606
iter 60 value 83.670102
iter 70 value 83.483262
iter 80 value 83.257998
iter 90 value 83.211717
iter 100 value 83.162925
final value 83.162925
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.208962
iter 10 value 94.505940
iter 20 value 94.306629
iter 30 value 86.978326
iter 40 value 86.713111
iter 50 value 86.546274
iter 60 value 84.628437
iter 70 value 83.357404
iter 80 value 82.622381
iter 90 value 82.392210
iter 100 value 82.149300
final value 82.149300
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.627165
iter 10 value 94.524481
iter 20 value 91.431041
iter 30 value 86.372798
iter 40 value 85.148039
iter 50 value 83.851782
iter 60 value 82.562959
iter 70 value 82.164655
iter 80 value 82.096118
iter 90 value 82.013480
iter 100 value 81.921269
final value 81.921269
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.343371
iter 10 value 94.142512
iter 20 value 91.789313
iter 30 value 85.936700
iter 40 value 85.692085
iter 50 value 85.314442
iter 60 value 83.897862
iter 70 value 82.830799
iter 80 value 82.636082
iter 90 value 82.312546
iter 100 value 82.075186
final value 82.075186
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.639691
iter 10 value 94.485980
iter 20 value 94.484251
final value 94.484216
converged
Fitting Repeat 2
# weights: 103
initial value 103.546962
final value 94.486179
converged
Fitting Repeat 3
# weights: 103
initial value 108.500876
final value 94.486132
converged
Fitting Repeat 4
# weights: 103
initial value 103.406339
final value 94.485875
converged
Fitting Repeat 5
# weights: 103
initial value 96.753446
final value 94.485823
converged
Fitting Repeat 1
# weights: 305
initial value 95.144735
iter 10 value 87.949691
iter 20 value 87.943539
iter 30 value 86.822362
iter 40 value 86.747540
iter 50 value 86.747446
final value 86.747415
converged
Fitting Repeat 2
# weights: 305
initial value 101.449792
iter 10 value 94.488969
iter 20 value 94.160949
final value 93.702911
converged
Fitting Repeat 3
# weights: 305
initial value 97.436413
iter 10 value 94.490805
final value 94.489796
converged
Fitting Repeat 4
# weights: 305
initial value 115.187248
iter 10 value 94.489260
iter 20 value 94.481032
iter 30 value 86.535792
final value 85.778816
converged
Fitting Repeat 5
# weights: 305
initial value 100.599842
iter 10 value 93.706693
iter 20 value 93.703902
final value 93.702902
converged
Fitting Repeat 1
# weights: 507
initial value 96.490941
iter 10 value 87.756237
iter 20 value 87.602824
iter 30 value 87.602118
iter 40 value 87.508806
iter 50 value 87.500990
iter 60 value 86.879131
iter 70 value 86.749936
iter 80 value 86.747563
iter 90 value 86.713285
iter 100 value 86.633747
final value 86.633747
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.675158
iter 10 value 85.187520
iter 20 value 84.926707
iter 30 value 84.772148
iter 40 value 84.765341
iter 50 value 84.736046
iter 60 value 83.818205
iter 70 value 83.296999
iter 80 value 82.424911
iter 90 value 82.202867
iter 100 value 82.123975
final value 82.123975
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.082962
iter 10 value 88.395678
iter 20 value 88.048682
iter 30 value 87.826234
iter 40 value 87.595388
iter 50 value 87.550663
iter 60 value 85.518995
iter 70 value 85.397263
iter 80 value 85.396447
iter 90 value 85.285913
iter 100 value 84.928719
final value 84.928719
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.484587
iter 10 value 94.487443
iter 20 value 87.867718
iter 30 value 86.413461
iter 40 value 86.412308
iter 50 value 86.370428
iter 60 value 86.166635
iter 70 value 85.657752
iter 80 value 85.474532
iter 90 value 84.756181
iter 100 value 84.646682
final value 84.646682
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.098052
iter 10 value 94.491519
iter 20 value 92.598670
iter 30 value 86.647796
iter 40 value 86.629270
iter 50 value 86.604285
iter 60 value 86.602339
iter 70 value 86.469854
iter 80 value 83.828559
iter 90 value 82.460614
iter 100 value 81.496610
final value 81.496610
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.166467
final value 94.165117
converged
Fitting Repeat 2
# weights: 103
initial value 111.416873
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.849542
iter 10 value 94.264419
iter 20 value 94.220788
final value 94.220410
converged
Fitting Repeat 4
# weights: 103
initial value 103.721539
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.694314
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 112.911400
final value 94.484209
converged
Fitting Repeat 2
# weights: 305
initial value 95.080115
final value 94.275362
converged
Fitting Repeat 3
# weights: 305
initial value 112.646198
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.596358
final value 94.381462
converged
Fitting Repeat 5
# weights: 305
initial value 97.297528
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 111.695104
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.218333
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 105.639447
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 96.993853
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 123.780671
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 100.632089
iter 10 value 86.800866
iter 20 value 85.746786
iter 30 value 85.504286
iter 40 value 84.812647
iter 50 value 84.667124
final value 84.666886
converged
Fitting Repeat 2
# weights: 103
initial value 99.762028
iter 10 value 94.482875
iter 20 value 91.874321
iter 30 value 88.973890
iter 40 value 88.636687
iter 50 value 87.089708
iter 60 value 84.862666
iter 70 value 83.385151
iter 80 value 82.773770
iter 90 value 82.645208
iter 100 value 82.607147
final value 82.607147
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.887977
iter 10 value 94.488343
iter 20 value 92.019001
iter 30 value 90.661410
iter 40 value 89.824990
iter 50 value 86.468454
iter 60 value 85.381947
iter 70 value 84.723029
iter 80 value 84.669001
final value 84.667057
converged
Fitting Repeat 4
# weights: 103
initial value 96.793562
iter 10 value 94.490203
iter 20 value 94.400562
iter 30 value 94.028350
iter 40 value 94.015770
iter 50 value 94.014267
iter 60 value 92.131211
iter 70 value 88.574253
iter 80 value 85.434928
iter 90 value 85.357080
iter 100 value 85.252254
final value 85.252254
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.358855
iter 10 value 94.404945
iter 20 value 94.085568
iter 30 value 87.950967
iter 40 value 86.146220
iter 50 value 85.641722
iter 60 value 84.829728
iter 70 value 84.667107
final value 84.666887
converged
Fitting Repeat 1
# weights: 305
initial value 101.200426
iter 10 value 95.027342
iter 20 value 94.896005
iter 30 value 86.947185
iter 40 value 84.503434
iter 50 value 83.816503
iter 60 value 82.807396
iter 70 value 82.219627
iter 80 value 82.204113
iter 90 value 81.736142
iter 100 value 81.444914
final value 81.444914
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.393922
iter 10 value 94.404814
iter 20 value 93.466581
iter 30 value 90.351170
iter 40 value 87.319705
iter 50 value 85.518211
iter 60 value 84.465633
iter 70 value 84.106445
iter 80 value 83.525993
iter 90 value 82.733372
iter 100 value 81.993797
final value 81.993797
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.300239
iter 10 value 94.078213
iter 20 value 91.747012
iter 30 value 89.946943
iter 40 value 85.040749
iter 50 value 84.930900
iter 60 value 84.915382
iter 70 value 84.429497
iter 80 value 84.316632
iter 90 value 84.198446
iter 100 value 84.041271
final value 84.041271
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.515659
iter 10 value 94.473712
iter 20 value 86.366237
iter 30 value 85.905278
iter 40 value 85.301679
iter 50 value 85.099679
iter 60 value 84.752152
iter 70 value 84.519921
iter 80 value 83.299871
iter 90 value 83.204090
iter 100 value 82.955933
final value 82.955933
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.080631
iter 10 value 94.284907
iter 20 value 87.078577
iter 30 value 86.122803
iter 40 value 85.182235
iter 50 value 85.064063
iter 60 value 84.967544
iter 70 value 84.611976
iter 80 value 84.472113
iter 90 value 84.426764
iter 100 value 84.411342
final value 84.411342
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 120.137237
iter 10 value 94.753713
iter 20 value 92.690211
iter 30 value 88.818633
iter 40 value 85.921017
iter 50 value 83.880473
iter 60 value 82.173175
iter 70 value 81.594345
iter 80 value 81.553215
iter 90 value 81.464798
iter 100 value 81.386604
final value 81.386604
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.485293
iter 10 value 94.414248
iter 20 value 92.678446
iter 30 value 84.692770
iter 40 value 84.314989
iter 50 value 84.065931
iter 60 value 83.731267
iter 70 value 82.102238
iter 80 value 81.852377
iter 90 value 81.770359
iter 100 value 81.569041
final value 81.569041
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.838584
iter 10 value 94.559318
iter 20 value 94.304793
iter 30 value 91.030881
iter 40 value 85.713097
iter 50 value 82.429788
iter 60 value 82.061372
iter 70 value 81.878326
iter 80 value 81.234669
iter 90 value 81.069844
iter 100 value 80.958689
final value 80.958689
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.447542
iter 10 value 94.468918
iter 20 value 91.990215
iter 30 value 85.977119
iter 40 value 85.185991
iter 50 value 85.086508
iter 60 value 83.884767
iter 70 value 83.168904
iter 80 value 82.345813
iter 90 value 81.414127
iter 100 value 81.230460
final value 81.230460
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.304014
iter 10 value 94.400380
iter 20 value 86.273540
iter 30 value 85.664582
iter 40 value 85.618705
iter 50 value 85.153425
iter 60 value 84.561789
iter 70 value 84.087173
iter 80 value 82.196702
iter 90 value 81.461428
iter 100 value 81.435016
final value 81.435016
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.000461
final value 94.485751
converged
Fitting Repeat 2
# weights: 103
initial value 96.371714
final value 94.485821
converged
Fitting Repeat 3
# weights: 103
initial value 99.547055
final value 94.485792
converged
Fitting Repeat 4
# weights: 103
initial value 97.395280
iter 10 value 94.485960
iter 20 value 94.483808
final value 94.275440
converged
Fitting Repeat 5
# weights: 103
initial value 97.465355
iter 10 value 94.485862
final value 94.484214
converged
Fitting Repeat 1
# weights: 305
initial value 112.455475
iter 10 value 94.280566
iter 20 value 94.266915
iter 30 value 87.718695
iter 40 value 87.280934
iter 50 value 87.277171
iter 60 value 87.208683
iter 70 value 86.288382
iter 80 value 85.869854
iter 90 value 85.863995
iter 100 value 85.863842
final value 85.863842
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.027283
iter 10 value 94.489377
iter 20 value 92.412498
iter 30 value 90.808440
iter 40 value 90.806821
iter 50 value 90.806536
final value 90.806528
converged
Fitting Repeat 3
# weights: 305
initial value 102.343131
iter 10 value 94.484513
iter 20 value 94.428569
iter 30 value 91.749388
iter 40 value 91.610932
final value 91.610705
converged
Fitting Repeat 4
# weights: 305
initial value 106.863400
iter 10 value 94.489261
iter 20 value 94.320752
iter 30 value 94.008056
final value 94.007368
converged
Fitting Repeat 5
# weights: 305
initial value 101.375772
iter 10 value 94.489380
iter 20 value 94.472664
iter 30 value 87.394414
iter 40 value 86.349431
iter 50 value 86.347187
iter 60 value 85.651261
iter 70 value 85.279841
iter 80 value 85.082517
iter 90 value 84.974372
final value 84.974269
converged
Fitting Repeat 1
# weights: 507
initial value 125.145959
iter 10 value 93.686125
iter 20 value 93.608022
iter 30 value 93.603197
iter 40 value 93.521027
iter 50 value 92.405365
iter 60 value 83.465093
iter 70 value 81.384309
iter 80 value 80.487058
iter 90 value 80.397751
iter 100 value 80.391517
final value 80.391517
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.986560
iter 10 value 94.283118
iter 20 value 94.275973
iter 30 value 85.861700
iter 40 value 85.054697
iter 50 value 84.666785
iter 60 value 83.127378
iter 70 value 83.125190
iter 80 value 83.119136
iter 90 value 83.113860
iter 100 value 83.097140
final value 83.097140
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.444091
iter 10 value 94.283670
iter 20 value 94.130761
iter 30 value 94.128268
iter 40 value 91.027966
iter 50 value 86.439655
iter 60 value 85.316967
iter 70 value 84.842699
iter 80 value 84.840466
iter 80 value 84.840466
final value 84.840466
converged
Fitting Repeat 4
# weights: 507
initial value 106.736617
iter 10 value 94.285477
iter 20 value 94.282254
iter 30 value 94.274830
iter 40 value 93.746057
iter 50 value 93.692647
final value 93.692616
converged
Fitting Repeat 5
# weights: 507
initial value 102.224453
iter 10 value 94.362913
iter 20 value 94.339794
iter 30 value 92.986429
iter 40 value 84.237069
iter 50 value 83.955377
iter 60 value 83.906841
iter 70 value 83.886505
iter 80 value 83.886185
iter 90 value 83.885283
final value 83.884906
converged
Fitting Repeat 1
# weights: 103
initial value 96.786660
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.304768
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 103.542920
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 107.510855
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.983919
iter 10 value 93.328361
final value 93.328261
converged
Fitting Repeat 1
# weights: 305
initial value 106.224258
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 112.021247
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 99.149333
iter 10 value 92.637738
final value 92.637734
converged
Fitting Repeat 4
# weights: 305
initial value 97.325703
iter 10 value 93.818911
final value 93.818714
converged
Fitting Repeat 5
# weights: 305
initial value 120.967602
iter 10 value 92.701658
iter 10 value 92.701657
iter 10 value 92.701657
final value 92.701657
converged
Fitting Repeat 1
# weights: 507
initial value 100.421903
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 119.473180
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 104.361063
iter 10 value 93.328264
final value 93.328261
converged
Fitting Repeat 4
# weights: 507
initial value 104.494289
iter 10 value 93.790798
iter 20 value 80.854885
iter 30 value 80.648744
final value 80.647832
converged
Fitting Repeat 5
# weights: 507
initial value 106.990349
iter 10 value 81.004568
iter 20 value 77.318883
iter 30 value 76.916619
iter 40 value 76.726838
iter 50 value 76.705201
iter 60 value 76.480962
iter 70 value 76.298613
iter 80 value 76.298364
iter 80 value 76.298364
final value 76.298364
converged
Fitting Repeat 1
# weights: 103
initial value 97.849921
iter 10 value 94.058979
iter 20 value 93.975765
iter 30 value 93.358822
iter 40 value 93.151548
iter 50 value 93.129771
iter 60 value 93.128393
iter 70 value 93.126389
iter 80 value 93.124422
iter 90 value 87.560331
iter 100 value 78.734485
final value 78.734485
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.834155
iter 10 value 94.058121
iter 20 value 94.024093
iter 30 value 93.757117
iter 40 value 93.705835
iter 50 value 93.680943
iter 60 value 93.294863
iter 70 value 83.486673
iter 80 value 81.988238
iter 90 value 81.832426
iter 100 value 81.574105
final value 81.574105
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.140876
iter 10 value 94.050659
iter 20 value 90.613143
iter 30 value 85.668537
iter 40 value 85.291341
iter 50 value 84.964994
iter 60 value 81.935955
iter 70 value 81.447762
iter 80 value 80.454476
iter 90 value 77.628087
iter 100 value 76.984853
final value 76.984853
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.959372
iter 10 value 93.660759
iter 20 value 93.534469
iter 30 value 92.684518
iter 40 value 86.531758
iter 50 value 83.281140
iter 60 value 81.118169
iter 70 value 79.722741
iter 80 value 77.895526
iter 90 value 77.337425
iter 100 value 77.049125
final value 77.049125
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.764814
iter 10 value 94.256226
iter 20 value 93.977710
iter 30 value 93.340863
iter 40 value 86.987723
iter 50 value 84.574438
iter 60 value 84.077529
iter 70 value 80.393645
iter 80 value 79.954789
iter 90 value 78.158192
iter 100 value 77.457648
final value 77.457648
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.657111
iter 10 value 93.866502
iter 20 value 83.102777
iter 30 value 81.606471
iter 40 value 79.152328
iter 50 value 78.908165
iter 60 value 77.069369
iter 70 value 76.663482
iter 80 value 76.539105
iter 90 value 76.477023
iter 100 value 76.393514
final value 76.393514
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.730746
iter 10 value 94.074473
iter 20 value 93.830099
iter 30 value 91.429909
iter 40 value 84.447220
iter 50 value 80.596098
iter 60 value 79.422488
iter 70 value 79.186680
iter 80 value 78.588870
iter 90 value 77.569379
iter 100 value 77.198318
final value 77.198318
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.854700
iter 10 value 94.125648
iter 20 value 89.393451
iter 30 value 86.909998
iter 40 value 85.024384
iter 50 value 82.913074
iter 60 value 81.745974
iter 70 value 81.229417
iter 80 value 81.154525
iter 90 value 80.887239
iter 100 value 77.906169
final value 77.906169
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.792321
iter 10 value 94.638349
iter 20 value 82.655717
iter 30 value 82.049309
iter 40 value 81.676262
iter 50 value 81.338255
iter 60 value 78.157739
iter 70 value 77.721445
iter 80 value 77.379529
iter 90 value 77.217946
iter 100 value 76.984038
final value 76.984038
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.731842
iter 10 value 93.903379
iter 20 value 86.884610
iter 30 value 82.321266
iter 40 value 81.559472
iter 50 value 81.264099
iter 60 value 79.582861
iter 70 value 78.087987
iter 80 value 76.397960
iter 90 value 75.631386
iter 100 value 75.472706
final value 75.472706
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.723233
iter 10 value 91.935328
iter 20 value 89.502053
iter 30 value 83.479660
iter 40 value 80.490889
iter 50 value 79.130124
iter 60 value 78.527542
iter 70 value 76.529315
iter 80 value 75.818420
iter 90 value 75.616487
iter 100 value 75.581434
final value 75.581434
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.679095
iter 10 value 96.388873
iter 20 value 85.028329
iter 30 value 82.530324
iter 40 value 80.722459
iter 50 value 80.069614
iter 60 value 79.549090
iter 70 value 78.311331
iter 80 value 77.819566
iter 90 value 77.633985
iter 100 value 77.532458
final value 77.532458
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.787463
iter 10 value 94.229825
iter 20 value 93.582022
iter 30 value 88.080381
iter 40 value 84.538542
iter 50 value 82.947896
iter 60 value 80.882734
iter 70 value 79.084365
iter 80 value 77.536185
iter 90 value 76.919677
iter 100 value 76.646713
final value 76.646713
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.039974
iter 10 value 93.420909
iter 20 value 91.202798
iter 30 value 85.460669
iter 40 value 83.924065
iter 50 value 79.575960
iter 60 value 78.043171
iter 70 value 76.694324
iter 80 value 75.706764
iter 90 value 75.471990
iter 100 value 75.339083
final value 75.339083
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.041361
iter 10 value 99.257577
iter 20 value 86.543675
iter 30 value 84.001827
iter 40 value 83.616675
iter 50 value 80.866590
iter 60 value 80.193511
iter 70 value 77.804377
iter 80 value 76.694460
iter 90 value 75.955648
iter 100 value 75.304349
final value 75.304349
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.159680
final value 94.054377
converged
Fitting Repeat 2
# weights: 103
initial value 97.831128
iter 10 value 93.536565
iter 10 value 93.536564
iter 10 value 93.536564
final value 93.536564
converged
Fitting Repeat 3
# weights: 103
initial value 103.887036
final value 94.054616
converged
Fitting Repeat 4
# weights: 103
initial value 100.759132
iter 10 value 94.054868
final value 94.053135
converged
Fitting Repeat 5
# weights: 103
initial value 94.966387
final value 94.054598
converged
Fitting Repeat 1
# weights: 305
initial value 108.319628
iter 10 value 94.057319
iter 20 value 93.726871
iter 30 value 92.933784
final value 92.926470
converged
Fitting Repeat 2
# weights: 305
initial value 100.351271
iter 10 value 94.058082
iter 20 value 93.382819
iter 30 value 83.462453
iter 40 value 83.462015
iter 50 value 83.460514
iter 60 value 83.459115
iter 70 value 83.162468
iter 80 value 80.741295
iter 90 value 77.431546
iter 100 value 76.694650
final value 76.694650
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 118.960926
iter 10 value 94.057735
iter 20 value 94.053800
iter 30 value 94.052912
iter 40 value 93.329621
final value 93.329307
converged
Fitting Repeat 4
# weights: 305
initial value 101.242484
iter 10 value 94.063539
iter 20 value 93.398839
iter 30 value 93.374318
iter 40 value 93.367271
iter 50 value 93.348977
iter 60 value 93.344276
iter 70 value 93.342776
iter 80 value 89.734762
iter 90 value 82.980355
iter 100 value 82.298534
final value 82.298534
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.387986
iter 10 value 94.058137
iter 20 value 93.939448
iter 30 value 84.842935
iter 40 value 84.351271
iter 50 value 84.351094
iter 60 value 84.350699
iter 70 value 81.341013
iter 80 value 80.399410
iter 90 value 77.421144
iter 100 value 76.818335
final value 76.818335
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.537846
final value 94.061284
converged
Fitting Repeat 2
# weights: 507
initial value 97.741678
iter 10 value 93.777893
iter 20 value 92.846783
iter 30 value 92.838752
iter 40 value 92.838333
iter 50 value 85.149401
iter 60 value 83.969119
iter 70 value 79.165775
iter 80 value 76.647151
iter 90 value 75.907342
iter 100 value 74.662619
final value 74.662619
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.855939
iter 10 value 94.060666
iter 20 value 94.017751
iter 30 value 89.001455
iter 40 value 88.418640
iter 50 value 88.412657
iter 60 value 83.115735
iter 70 value 82.838306
iter 80 value 79.207243
iter 90 value 78.998826
iter 100 value 78.997026
final value 78.997026
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.054653
iter 10 value 94.061555
iter 20 value 93.932813
iter 30 value 91.529678
iter 40 value 91.510731
final value 91.510716
converged
Fitting Repeat 5
# weights: 507
initial value 112.636201
iter 10 value 93.561462
iter 20 value 93.541462
iter 30 value 93.500639
iter 40 value 93.260870
iter 50 value 93.065524
iter 60 value 91.350064
iter 70 value 79.448282
iter 80 value 79.066675
iter 90 value 79.002813
final value 79.002375
converged
Fitting Repeat 1
# weights: 305
initial value 127.581732
iter 10 value 117.901914
iter 20 value 117.756253
iter 30 value 108.675590
iter 40 value 106.631931
iter 50 value 105.128695
iter 60 value 104.254384
iter 70 value 103.815526
iter 80 value 103.695547
iter 90 value 103.446054
iter 100 value 103.147798
final value 103.147798
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 127.502101
iter 10 value 117.942669
iter 20 value 117.653006
iter 30 value 117.488732
iter 40 value 109.230697
iter 50 value 107.579242
iter 60 value 102.953646
iter 70 value 102.105923
iter 80 value 101.620085
iter 90 value 101.401601
iter 100 value 101.238034
final value 101.238034
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 137.646237
iter 10 value 110.454715
iter 20 value 109.641417
iter 30 value 109.507835
iter 40 value 107.387675
iter 50 value 106.172284
iter 60 value 104.266154
iter 70 value 103.336157
iter 80 value 102.345279
iter 90 value 101.681089
iter 100 value 101.209831
final value 101.209831
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.947957
iter 10 value 118.019284
iter 20 value 115.986666
iter 30 value 114.446613
iter 40 value 104.998448
iter 50 value 102.081291
iter 60 value 101.904035
iter 70 value 101.811322
iter 80 value 101.326346
iter 90 value 100.808186
iter 100 value 100.564990
final value 100.564990
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 123.324791
iter 10 value 117.789056
iter 20 value 110.830320
iter 30 value 104.309556
iter 40 value 102.674474
iter 50 value 102.081736
iter 60 value 101.595453
iter 70 value 101.307657
iter 80 value 100.856982
iter 90 value 100.494749
iter 100 value 100.354932
final value 100.354932
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 22 20:18:45 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
19.777 0.719 80.643
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.106 | 0.175 | 18.127 | |
| FreqInteractors | 0.158 | 0.007 | 0.166 | |
| calculateAAC | 0.013 | 0.001 | 0.014 | |
| calculateAutocor | 0.120 | 0.007 | 0.127 | |
| calculateCTDC | 0.028 | 0.001 | 0.028 | |
| calculateCTDD | 0.174 | 0.013 | 0.188 | |
| calculateCTDT | 0.057 | 0.002 | 0.060 | |
| calculateCTriad | 0.145 | 0.007 | 0.154 | |
| calculateDC | 0.032 | 0.003 | 0.035 | |
| calculateF | 0.101 | 0.001 | 0.102 | |
| calculateKSAAP | 0.038 | 0.004 | 0.040 | |
| calculateQD_Sm | 0.642 | 0.027 | 0.669 | |
| calculateTC | 0.582 | 0.079 | 0.663 | |
| calculateTC_Sm | 0.099 | 0.008 | 0.108 | |
| corr_plot | 17.069 | 0.125 | 17.242 | |
| enrichfindP | 0.198 | 0.033 | 10.650 | |
| enrichfind_hp | 0.016 | 0.003 | 0.940 | |
| enrichplot | 0.168 | 0.003 | 0.170 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.031 | 0.007 | 3.530 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0 | 0 | 0 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.000 | 0.001 | |
| plotPPI | 0.032 | 0.002 | 0.034 | |
| pred_ensembel | 6.261 | 0.149 | 5.715 | |
| var_imp | 17.104 | 0.157 | 17.413 | |