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This page was generated on 2025-04-01 06:08 -0400 (Tue, 01 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 179/217HostnameOS / ArchINSTALLBUILDCHECK
Rsubread 2.21.3  (landing page)
Wei Shi , Yang Liao and Gordon K Smyth
Snapshot Date: 2025-04-01 06:00 -0400 (Tue, 01 Apr 2025)
git_url: https://git.bioconductor.org/packages/Rsubread
git_branch: devel
git_last_commit: 9eee9f0
git_last_commit_date: 2025-03-21 00:11:59 -0400 (Fri, 21 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

INSTALL results for Rsubread on teran2

To the developers/maintainers of the Rsubread package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rsubread
Version: 2.21.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL Rsubread
StartedAt: 2025-04-01 06:04:25 -0400 (Tue, 01 Apr 2025)
EndedAt: 2025-04-01 06:04:27 -0400 (Tue, 01 Apr 2025)
EllapsedTime: 2.2 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL Rsubread
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘Rsubread’ ...
** this is package ‘Rsubread’ version ‘2.21.3’
** using staged installation
@@@@@ The operating system is Linux.
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG   -I/usr/local/include   -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.21.3\"" -g3  -fpic  -g -O2  -Wall -Werror=format-security -c HelperFunctions.c -o HelperFunctions.o
HelperFunctions.c:3264:1: fatal error: error writing to /tmp/ccAi5KKV.s: No space left on device
 3264 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:195: HelperFunctions.o] Error 1
ERROR: compilation failed for package ‘Rsubread’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rsubread’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rsubread’