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This page was generated on 2025-04-01 18:16 -0400 (Tue, 01 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 179/217HostnameOS / ArchINSTALLBUILDCHECK
Rsubread 2.21.3  (landing page)
Wei Shi , Yang Liao and Gordon K Smyth
Snapshot Date: 2025-04-01 18:00 -0400 (Tue, 01 Apr 2025)
git_url: https://git.bioconductor.org/packages/Rsubread
git_branch: devel
git_last_commit: 9eee9f0
git_last_commit_date: 2025-03-21 00:11:59 -0400 (Fri, 21 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for Rsubread on teran2

To the developers/maintainers of the Rsubread package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rsubread
Version: 2.21.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
StartedAt: 2025-04-01 18:15:11 -0400 (Tue, 01 Apr 2025)
EndedAt: 2025-04-01 18:15:11 -0400 (Tue, 01 Apr 2025)
EllapsedTime: 0.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
###
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* checking for file ‘Rsubread/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/cellCounts.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/align.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/atgcContent.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/buildindex.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/detectionCall.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/detectionCallAnnotation.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/findCommonVariants.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/exactSNP.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/flattenGTF.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/processExons.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/getInBuiltAnnotation.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/promoterRegions.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/simReads.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/propmapped.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/qualityScores.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/removeDupReads.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/repair.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/sam2bed.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/txUnique.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/subjunc.R': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/R/sublong.R': No space left on device
cp: cannot create directory '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/inst': No space left on device
cp: cannot create directory '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/man': No space left on device
cp: cannot create directory '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/src': No space left on device
cp: cannot create directory '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/vignettes': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/CHANGE_IN_RELEASED_VERSION': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/NAMESPACE': No space left on device
cp: error writing '/tmp/RtmpOIlx3t/Rbuild2cce687d61417d/Rsubread/configure': No space left on device
 ERROR
copying to build directory failed