Multiple platform build/check report for BioC 3.21 - BUILD BIN results for iCARE on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4782
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4552
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4581
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4533
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4463
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for iCARE on palomino7

To the developers/maintainers of the iCARE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCARE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: iCARE

Version: 1.35.0

Command: rm -rf iCARE.buildbin-libdir && mkdir iCARE.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=iCARE.buildbin-libdir iCARE_1.35.0.tar.gz

StartedAt: 2025-03-25 08:35:26 -0400 (Tue, 25 Mar 2025)

EndedAt: 2025-03-25 08:35:47 -0400 (Tue, 25 Mar 2025)

EllapsedTime: 20.6 seconds

RetCode: 0

Status: OK

PackageFile: iCARE_1.35.0.zip

PackageFileSize: 1.346 MiB

Command output

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### Running command:
###
###   rm -rf iCARE.buildbin-libdir && mkdir iCARE.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=iCARE.buildbin-libdir iCARE_1.35.0.tar.gz
###
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* installing *source* package 'iCARE' ...
** this is package 'iCARE' version '1.35.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c source.c -o source.o
source.c: In function 'dVec_alloc':
source.c:45:10: warning: old-style function definition [-Wold-style-definition]
   45 | double * dVec_alloc(n, initFlag, initVal)
      |          ^~~~~~~~~~
source.c: In function 'iVec_alloc':
source.c:64:7: warning: old-style function definition [-Wold-style-definition]
   64 | int * iVec_alloc(n, initFlag, initVal)
      |       ^~~~~~~~~~
source.c: In function 'dMat_alloc':
source.c:81:11: warning: old-style function definition [-Wold-style-definition]
   81 | double ** dMat_alloc(nrow, ncol, initFlag, initVal)
      |           ^~~~~~~~~~
source.c: In function 'matrix_free':
source.c:98:6: warning: old-style function definition [-Wold-style-definition]
   98 | void matrix_free(x, n)
      |      ^~~~~~~~~~~
source.c: In function 'get_non_miss':
source.c:114:12: warning: old-style function definition [-Wold-style-definition]
  114 | static int get_non_miss(vec, n, ovec)
      |            ^~~~~~~~~~~~
source.c: In function 'X_y':
source.c:135:13: warning: old-style function definition [-Wold-style-definition]
  135 | static void X_y(X, nr, nc, y, index, ni, ret)
      |             ^~~
source.c: In function 'X_y2':
source.c:155:13: warning: old-style function definition [-Wold-style-definition]
  155 | static void X_y2(X, nc, y, z, index, ni, ret)
      |             ^~~~
source.c: In function 'vec_mult':
source.c:185:15: warning: old-style function definition [-Wold-style-definition]
  185 | static double vec_mult(x, y, index, ni)
      |               ^~~~~~~~
source.c: In function 'vec_lteq_c':
source.c:203:12: warning: old-style function definition [-Wold-style-definition]
  203 | static int vec_lteq_c(vec, n, c)
      |            ^~~~~~~~~~
source.c: In function 'mean_2val':
source.c:224:15: warning: old-style function definition [-Wold-style-definition]
  224 | static double mean_2val(vec, subvec, nsub, weights)
      |               ^~~~~~~~~
source.c: In function 'mat_from_vec':
source.c:241:13: warning: old-style function definition [-Wold-style-definition]
  241 | static void mat_from_vec(vec, nr, nc, mat)
      |             ^~~~~~~~~~~~
source.c: In function 'quant_vecs':
source.c:256:12: warning: old-style function definition [-Wold-style-definition]
  256 | static int quant_vecs(probs, nprobs, n, ivec, lo, hi, h)
      |            ^~~~~~~~~~
source.c: In function 'quantile':
source.c:284:13: warning: old-style function definition [-Wold-style-definition]
  284 | static void quantile(x, n, probs, nprobs, lo, hi, h, ivec, ni, qs)
      |             ^~~~~~~~
source.c: In function 'var_dvec':
source.c:338:15: warning: old-style function definition [-Wold-style-definition]
  338 | static double var_dvec(vec, n)
      |               ^~~~~~~~
source.c: In function 'get_cutpoints':
source.c:358:12: warning: old-style function definition [-Wold-style-definition]
  358 | static int get_cutpoints(quantiles, nq, ref_LP, nref)
      |            ^~~~~~~~~~~~~
source.c: In function 'get_miss_perc':
source.c:406:12: warning: old-style function definition [-Wold-style-definition]
  406 | static int get_miss_perc(cutpoints, ncuts, miss_LP)
      |            ^~~~~~~~~~~~~
source.c: In function 'vec_ab':
source.c:427:12: warning: old-style function definition [-Wold-style-definition]
  427 | static int vec_ab(x, n, a, b)
      |            ^~~~~~
source.c: In function 'get_newEndpoints':
source.c:444:13: warning: old-style function definition [-Wold-style-definition]
  444 | static void get_newEndpoints(cutpoints, ncuts, miss_LP, miss_perc, ref_LP, nref, rcut1, rcut2)
      |             ^~~~~~~~~~~~~~~~
source.c: In function 'get_subs_2cut':
source.c:471:12: warning: old-style function definition [-Wold-style-definition]
  471 | static int get_subs_2cut(x, n, a, b, ret)
      |            ^~~~~~~~~~~~~
source.c: In function 'get_wgts':
source.c:493:13: warning: old-style function definition [-Wold-style-definition]
  493 | static void get_wgts(weights, subvec, nsub, retvec)
      |             ^~~~~~~~
source.c: In function 'ref_risk1':
source.c:511:6: warning: old-style function definition [-Wold-style-definition]
  511 | void ref_risk1(ref_risks, betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref,
      |      ^~~~~~~~~
source.c: In function 'get_int':
source.c:619:13: warning: old-style function definition [-Wold-style-definition]
  619 | static void get_int(nsub, age_new, t, aexp_rr, lambda, comp, zbeta, holder)
      |             ^~~~~~~
source.c: In function 'finalVal':
source.c:645:15: warning: old-style function definition [-Wold-style-definition]
  645 | static double finalVal(nsub, zbeta, expzbeta, age_new, age_int, lambda, loglambda, compRates, holder, tempv, weights)
      |               ^~~~~~~~
source.c: In function 'ref_risk2':
source.c:684:6: warning: old-style function definition [-Wold-style-definition]
  684 | void ref_risk2(betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref,
      |      ^~~~~~~~~
gcc -shared -s -static-libgcc -o iCARE.dll tmp.def source.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/iCARE.buildbin-libdir/00LOCK-iCARE/00new/iCARE/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'iCARE' as iCARE_1.35.0.zip
* DONE (iCARE)