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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL iCARE
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘iCARE’ ...
** this is package ‘iCARE’ version ‘1.35.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c source.c -o source.o
source.c: In function ‘dVec_alloc’:
source.c:45:10: warning: old-style function definition [-Wold-style-definition]
45 | double * dVec_alloc(n, initFlag, initVal)
| ^~~~~~~~~~
source.c: In function ‘iVec_alloc’:
source.c:64:7: warning: old-style function definition [-Wold-style-definition]
64 | int * iVec_alloc(n, initFlag, initVal)
| ^~~~~~~~~~
source.c: In function ‘dMat_alloc’:
source.c:81:11: warning: old-style function definition [-Wold-style-definition]
81 | double ** dMat_alloc(nrow, ncol, initFlag, initVal)
| ^~~~~~~~~~
source.c: In function ‘matrix_free’:
source.c:98:6: warning: old-style function definition [-Wold-style-definition]
98 | void matrix_free(x, n)
| ^~~~~~~~~~~
source.c: In function ‘get_non_miss’:
source.c:114:12: warning: old-style function definition [-Wold-style-definition]
114 | static int get_non_miss(vec, n, ovec)
| ^~~~~~~~~~~~
source.c: In function ‘X_y’:
source.c:135:13: warning: old-style function definition [-Wold-style-definition]
135 | static void X_y(X, nr, nc, y, index, ni, ret)
| ^~~
source.c: In function ‘X_y2’:
source.c:155:13: warning: old-style function definition [-Wold-style-definition]
155 | static void X_y2(X, nc, y, z, index, ni, ret)
| ^~~~
source.c: In function ‘vec_mult’:
source.c:185:15: warning: old-style function definition [-Wold-style-definition]
185 | static double vec_mult(x, y, index, ni)
| ^~~~~~~~
source.c: In function ‘vec_lteq_c’:
source.c:203:12: warning: old-style function definition [-Wold-style-definition]
203 | static int vec_lteq_c(vec, n, c)
| ^~~~~~~~~~
source.c: In function ‘mean_2val’:
source.c:224:15: warning: old-style function definition [-Wold-style-definition]
224 | static double mean_2val(vec, subvec, nsub, weights)
| ^~~~~~~~~
source.c: In function ‘mat_from_vec’:
source.c:241:13: warning: old-style function definition [-Wold-style-definition]
241 | static void mat_from_vec(vec, nr, nc, mat)
| ^~~~~~~~~~~~
source.c: In function ‘quant_vecs’:
source.c:256:12: warning: old-style function definition [-Wold-style-definition]
256 | static int quant_vecs(probs, nprobs, n, ivec, lo, hi, h)
| ^~~~~~~~~~
source.c: In function ‘quantile’:
source.c:284:13: warning: old-style function definition [-Wold-style-definition]
284 | static void quantile(x, n, probs, nprobs, lo, hi, h, ivec, ni, qs)
| ^~~~~~~~
source.c: In function ‘var_dvec’:
source.c:338:15: warning: old-style function definition [-Wold-style-definition]
338 | static double var_dvec(vec, n)
| ^~~~~~~~
source.c: In function ‘get_cutpoints’:
source.c:358:12: warning: old-style function definition [-Wold-style-definition]
358 | static int get_cutpoints(quantiles, nq, ref_LP, nref)
| ^~~~~~~~~~~~~
source.c: In function ‘get_miss_perc’:
source.c:406:12: warning: old-style function definition [-Wold-style-definition]
406 | static int get_miss_perc(cutpoints, ncuts, miss_LP)
| ^~~~~~~~~~~~~
source.c: In function ‘vec_ab’:
source.c:427:12: warning: old-style function definition [-Wold-style-definition]
427 | static int vec_ab(x, n, a, b)
| ^~~~~~
source.c: In function ‘get_newEndpoints’:
source.c:444:13: warning: old-style function definition [-Wold-style-definition]
444 | static void get_newEndpoints(cutpoints, ncuts, miss_LP, miss_perc, ref_LP, nref, rcut1, rcut2)
| ^~~~~~~~~~~~~~~~
source.c: In function ‘get_subs_2cut’:
source.c:471:12: warning: old-style function definition [-Wold-style-definition]
471 | static int get_subs_2cut(x, n, a, b, ret)
| ^~~~~~~~~~~~~
source.c: In function ‘get_wgts’:
source.c:493:13: warning: old-style function definition [-Wold-style-definition]
493 | static void get_wgts(weights, subvec, nsub, retvec)
| ^~~~~~~~
source.c: In function ‘ref_risk1’:
source.c:511:6: warning: old-style function definition [-Wold-style-definition]
511 | void ref_risk1(ref_risks, betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref,
| ^~~~~~~~~
source.c: In function ‘get_int’:
source.c:619:13: warning: old-style function definition [-Wold-style-definition]
619 | static void get_int(nsub, age_new, t, aexp_rr, lambda, comp, zbeta, holder)
| ^~~~~~~
source.c: In function ‘finalVal’:
source.c:645:15: warning: old-style function definition [-Wold-style-definition]
645 | static double finalVal(nsub, zbeta, expzbeta, age_new, age_int, lambda, loglambda, compRates, holder, tempv, weights)
| ^~~~~~~~
source.c: In function ‘ref_risk2’:
source.c:684:6: warning: old-style function definition [-Wold-style-definition]
684 | void ref_risk2(betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref,
| ^~~~~~~~~
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o iCARE.so source.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-iCARE/00new/iCARE/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iCARE)
