Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4783
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4552
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4581
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4533
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4463
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-03-26 18:16:39 -0400 (Wed, 26 Mar 2025)

EndedAt: 2025-03-26 18:17:17 -0400 (Wed, 26 Mar 2025)

EllapsedTime: 37.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-26 18:16:54.240][biodb::testContext]
biodb.INFO [2025-03-26 18:16:54.241][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:16:54.242][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-26 18:16:54.242][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:16:54.242][biodb::testContext]
biodb.INFO [2025-03-26 18:16:54.243][biodb::testThat]
biodb.INFO [2025-03-26 18:16:54.243][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-26 18:16:54.243][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:54.243][biodb::testThat]
biodb.INFO [2025-03-26 18:16:54.286][biodb::testContext]
biodb.INFO [2025-03-26 18:16:54.287][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:16:54.287][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-26 18:16:54.287][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:16:54.287][biodb::testContext]
biodb.INFO [2025-03-26 18:16:54.291][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:16:54.292][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 18:16:54.295][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:16:54.295][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 18:16:54.295][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.296][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 18:16:54.305][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.306][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 18:16:54.306][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.307][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 18:16:54.307][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 18:16:54.307][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 18:16:54.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.308][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 18:16:54.308][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 18:16:54.309][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.309][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 18:16:54.310][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 18:16:54.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.310][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 18:16:54.311][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 18:16:54.311][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 18:16:54.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.312][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 18:16:54.312][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.313][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 18:16:54.313][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 18:16:54.313][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 18:16:54.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.314][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:16:54.314][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 18:16:54.315][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 18:16:54.315][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 18:16:54.315][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 18:16:54.315][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 18:16:54.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.316][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 18:16:54.316][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 18:16:54.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.317][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 18:16:54.318][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 18:16:54.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.318][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 18:16:54.319][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 18:16:54.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.319][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 18:16:54.320][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 18:16:54.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.321][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 18:16:54.321][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 18:16:54.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.322][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:16:54.322][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 18:16:54.329][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 18:16:54.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.330][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 18:16:54.330][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 18:16:54.331][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 18:16:54.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.333][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 18:16:54.345][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.350][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 18:16:54.350][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.350][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:16:54.350][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.351][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.351][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.351][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.352][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:16:54.352][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:16:54.352][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.352][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:16:54.353][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:16:54.354][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:16:54.354][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.354][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.354][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:16:54.355][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.355][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.355][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.356][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.358][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.359][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.359][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.359][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.359][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 18:16:54.360][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.360][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:16:54.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.361][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:16:54.361][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.361][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.362][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.362][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:16:54.362][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:16:54.363][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.363][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 18:16:54.363][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:16:54.363][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:16:54.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.365][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:16:54.365][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.366][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.366][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.367][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.367][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.367][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 18:16:54.368][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.368][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 18:16:54.368][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.369][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:16:54.369][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.369][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.369][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.370][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.370][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:16:54.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:16:54.370][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.371][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 18:16:54.371][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:16:54.371][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.371][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.372][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.372][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:16:54.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:16:54.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.373][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.374][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.374][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.374][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.374][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.375][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.375][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 18:16:54.375][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.376][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:16:54.376][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.376][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:16:54.376][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.377][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.377][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.377][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:16:54.378][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:16:54.378][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.378][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 18:16:54.378][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:16:54.379][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.379][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.379][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.379][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:16:54.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.380][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:16:54.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.381][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.381][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.381][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.381][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.382][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.382][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.382][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.384][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:16:54.384][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.404][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 18:16:54.409][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 18:16:54.410][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 18:16:54.410][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 18:16:54.410][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 18:16:54.411][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:16:54.411][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 18:16:54.411][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 18:16:54.412][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 18:16:54.412][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:16:54.413][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:16:54.413][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 18:16:54.413][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 18:16:54.414][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 18:16:54.414][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 18:16:54.414][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:16:54.415][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 18:16:54.415][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 18:16:54.416][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 18:16:54.416][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 18:16:54.416][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 18:16:54.417][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 18:16:54.417][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 18:16:54.417][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 18:16:54.418][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 18:16:54.418][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 18:16:54.419][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 18:16:54.419][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 18:16:54.419][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 18:16:54.420][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 18:16:54.420][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 18:16:54.421][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 18:16:54.421][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 18:16:54.421][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 18:16:54.422][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 18:16:54.422][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 18:16:54.422][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 18:16:54.423][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 18:16:54.423][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 18:16:54.423][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 18:16:54.424][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 18:16:54.424][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 18:16:54.425][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 18:16:54.425][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 18:16:54.425][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 18:16:54.426][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 18:16:54.426][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 18:16:54.426][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 18:16:54.427][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 18:16:54.427][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 18:16:54.428][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 18:16:54.428][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 18:16:54.428][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 18:16:54.429][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 18:16:54.429][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 18:16:54.429][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 18:16:54.430][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 18:16:54.430][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 18:16:54.430][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 18:16:54.431][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 18:16:54.431][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 18:16:54.432][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 18:16:54.432][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 18:16:54.432][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 18:16:54.433][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 18:16:54.433][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 18:16:54.433][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 18:16:54.434][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 18:16:54.434][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 18:16:54.434][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 18:16:54.435][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 18:16:54.435][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 18:16:54.435][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 18:16:54.436][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 18:16:54.436][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 18:16:54.437][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 18:16:54.437][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 18:16:54.437][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 18:16:54.438][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 18:16:54.438][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 18:16:54.438][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 18:16:54.439][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 18:16:54.439][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 18:16:54.441][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 18:16:54.442][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:16:54.443][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:16:54.443][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.444][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:16:54.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:16:54.485][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 18:16:54.488][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:16:54.488][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.489][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.489][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.489][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:16:54.489][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.490][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 18:16:54.490][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.490][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 18:16:54.491][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:16:54.491][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.491][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 18:16:54.491][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 18:16:54.492][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 18:16:54.493][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 18:16:54.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.493][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.493][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:16:54.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:16:54.494][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:16:54.494][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:16:54.494][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:16:54.494][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 18:16:54.494][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.495][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.495][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 18:16:54.495][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:16:54.497][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 18:16:54.498][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:16:54.498][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:16:54.498][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:16:54.499][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:16:54.509][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:16:54.509][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 18:16:54.511][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:16:54.512][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:16:54.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:16:54.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:16:54.514][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 18:16:54.515][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 18:16:54.515][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:16:54.515][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 18:16:54.515][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:16:54.516][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:16:54.516][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 18:16:54.516][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 18:16:54.516][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:16:54.525][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:16:54.525][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:16:54.525][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:16:54.526][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:16:54.526][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:16:54.526][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 18:16:54.530][biodb::testThat]
biodb.INFO [2025-03-26 18:16:54.530][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-26 18:16:54.530][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:54.530][biodb::testThat]
biodb.TRACE[2025-03-26 18:16:54.532][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-26 18:16:54.533][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:16:54.534][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:16:54.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:16:54.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:16:54.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.546][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.551][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.551][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.560][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.561][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.561][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.563][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.563][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.568][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.568][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.578][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.578][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.580][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.580][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.593][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.593][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.597][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:16:54.597][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:16:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.616][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.649][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:16:54.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:16:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:54.698][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 18:16:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.712][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:54.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.731][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.741][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.741][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.749][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.749][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.791][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.792][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.799][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.807][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.807][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.823][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.823][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.833][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.833][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.841][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.841][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.857][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.875][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.875][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.882][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.882][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.884][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.884][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.889][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.889][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.891][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.893][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.894][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.896][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.896][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.898][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.898][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.922][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.922][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.925][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 18:16:54.928][biodb::testThat]
biodb.INFO [2025-03-26 18:16:54.928][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-26 18:16:54.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:54.929][biodb::testThat]
biodb.DEBUG[2025-03-26 18:16:54.934][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-26 18:16:54.937][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 18:16:54.938][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:54.939][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 18:16:54.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 18:16:54.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 18:16:54.941][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-26 18:16:54.941][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:16:54.948][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:16:54.949][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:16:54.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:16:54.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:16:54.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:16:54.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:16:54.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:16:54.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:16:54.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:16:54.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.956][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.956][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.958][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.958][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.960][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.960][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.967][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.967][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:54.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.976][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.976][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:54.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.985][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.988][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.988][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:54.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.992][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:16:54.993][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:16:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:54.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:16:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:16:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:16:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:16:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:16:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:16:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:16:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:16:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:16:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:16:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:16:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:16:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:16:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:16:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:16:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:16:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:16:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:16:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:16:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:16:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:16:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:16:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:16:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.076][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 18:16:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-26 18:16:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-26 18:16:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-26 18:16:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-26 18:16:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-26 18:16:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-26 18:16:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 18:16:55.083][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.083][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-26 18:16:55.083][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.083][biodb::testThat]
biodb.TRACE[2025-03-26 18:16:55.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.085][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.086][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-26 18:16:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.099][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-26 18:16:55.099][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-26 18:16:55.100][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 18:16:55.100][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 18:16:55.100][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.101][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.101][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:16:55.102][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.102][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:16:55.102][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:16:55.103][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:16:55.103][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:16:55.103][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:16:55.103][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:16:55.104][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:16:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.108][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:16:55.109][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:16:55.109][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 18:16:55.113][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.113][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.114][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.114][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-26 18:16:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.122][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.125][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-26 18:16:55.143][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 18:16:55.144][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-26 18:16:55.144][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-26 18:16:55.148][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.149][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.149][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:16:55.150][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.150][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:16:55.155][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:16:55.158][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:16:55.158][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:16:55.158][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:16:55.158][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:16:55.159][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:16:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:16:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:16:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.164][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:16:55.164][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:16:55.164][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 18:16:55.169][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.169][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.170][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.171][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-26 18:16:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.179][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-26 18:16:55.180][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-26 18:16:55.180][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-26 18:16:55.180][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-26 18:16:55.181][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.181][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.182][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:16:55.182][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.182][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:16:55.183][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:16:55.183][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:16:55.183][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:16:55.184][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:16:55.184][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:16:55.184][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:16:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:16:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.189][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:16:55.189][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:16:55.189][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-26 18:16:55.194][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.195][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-26 18:16:55.195][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.195][biodb::testThat]
biodb.TRACE[2025-03-26 18:16:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.208][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-26 18:16:55.208][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 18:16:55.208][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 18:16:55.209][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.209][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.209][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:16:55.210][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:16:55.210][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:16:55.210][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:16:55.211][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:16:55.211][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:16:55.211][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:16:55.211][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:16:55.212][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:16:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:16:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:16:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:16:55.216][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:16:55.216][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-26 18:16:55.221][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.221][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-26 18:16:55.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.222][biodb::testThat]
biodb.TRACE[2025-03-26 18:16:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 18:16:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 18:16:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:16:55.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 18:16:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:16:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 18:16:55.254][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.254][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-26 18:16:55.254][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.255][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.257][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.257][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-26 18:16:55.258][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.258][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.260][biodb::testThat]
biodb.INFO [2025-03-26 18:16:55.260][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-26 18:16:55.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:16:55.261][biodb::testThat]
biodb.DEBUG[2025-03-26 18:16:55.262][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-26 18:17:10.934][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-26 18:17:10.981][biodb::testThat]
biodb.INFO [2025-03-26 18:17:10.981][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-26 18:17:10.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:10.982][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.031][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-26 18:17:14.056][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.058][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.058][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.059][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.059][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.059][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.060][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 18:17:14.060][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.061][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-26 18:17:14.061][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.061][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.062][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-26 18:17:14.082][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-03-26 18:17:14.083][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-03-26 18:17:14.083][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-03-26 18:17:14.084][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-03-26 18:17:14.084][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-03-26 18:17:14.085][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-03-26 18:17:14.085][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 18:17:14.086][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 18:17:14.087][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 18:17:14.087][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-03-26 18:17:14.088][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker99c678e6150marker".
biodb.TRACE[2025-03-26 18:17:14.088][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-03-26 18:17:14.089][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 18:17:14.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-26 18:17:14.089][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-03-26 18:17:14.090][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-03-26 18:17:14.090][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 18:17:14.090][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2025-03-26 18:17:14.098][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-03-26 18:17:14.098][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-03-26 18:17:14.099][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-03-26 18:17:14.099][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2025-03-26 18:17:14.103][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-03-26 18:17:14.103][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 18:17:14.104][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 18:17:14.104][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-03-26 18:17:14.104][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker99c61496cf10marker".
biodb.TRACE[2025-03-26 18:17:14.105][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-03-26 18:17:14.105][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-03-26 18:17:14.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-26 18:17:14.111][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-26 18:17:14.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-26 18:17:14.112][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:17:14.112][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.112][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:17:14.113][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:17:14.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:14.142][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-26 18:17:14.142][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-26 18:17:14.148][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.148][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-26 18:17:14.148][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.149][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.152][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-26 18:17:14.152][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-26 18:17:14.152][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 18:17:14.153][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.153][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 18:17:14.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-26 18:17:14.154][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-26 18:17:14.155][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-26 18:17:14.155][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:17:14.155][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.156][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:17:14.156][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:17:14.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:14.173][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-26 18:17:14.173][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-26 18:17:14.173][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-26 18:17:14.178][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.178][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-26 18:17:14.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.179][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.186][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.187][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-26 18:17:14.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.187][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.188][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.188][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.189][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:14.189][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.189][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:14.190][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:14.190][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:14.190][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:14.191][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-26 18:17:14.193][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.194][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-26 18:17:14.194][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.194][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.196][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:14.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.196][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:14.197][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:14.197][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:14.197][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:14.198][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-26 18:17:14.200][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.201][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.202][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.203][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.203][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.206][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 18:17:14.207][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 18:17:14.207][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 18:17:14.210][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 18:17:14.210][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 18:17:14.210][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.211][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.211][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 18:17:14.213][biodb::testContext]
biodb.INFO [2025-03-26 18:17:14.213][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:17:14.213][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-26 18:17:14.214][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:17:14.214][biodb::testContext]
biodb.INFO [2025-03-26 18:17:14.216][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:17:14.216][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 18:17:14.218][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.218][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 18:17:14.218][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.219][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 18:17:14.220][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.221][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 18:17:14.221][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.222][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 18:17:14.222][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 18:17:14.222][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.223][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 18:17:14.223][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 18:17:14.224][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.225][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 18:17:14.225][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.226][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 18:17:14.226][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 18:17:14.226][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 18:17:14.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.227][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 18:17:14.228][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.229][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 18:17:14.229][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 18:17:14.229][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.230][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:17:14.230][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 18:17:14.231][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 18:17:14.231][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 18:17:14.231][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 18:17:14.231][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 18:17:14.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.232][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 18:17:14.233][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 18:17:14.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.234][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 18:17:14.234][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 18:17:14.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.235][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 18:17:14.235][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.236][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 18:17:14.236][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 18:17:14.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.240][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 18:17:14.241][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 18:17:14.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.242][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:17:14.242][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 18:17:14.248][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 18:17:14.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.249][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 18:17:14.250][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 18:17:14.250][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 18:17:14.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.251][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 18:17:14.252][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.252][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 18:17:14.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.253][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.253][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.253][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.253][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.254][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.254][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:17:14.254][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.254][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.255][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 18:17:14.255][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.255][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.257][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.257][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.258][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.258][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.258][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.258][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.259][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.259][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.259][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.259][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 18:17:14.260][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.260][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:17:14.260][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.261][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.261][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.261][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.261][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.262][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:17:14.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.262][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.263][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 18:17:14.263][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.263][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.264][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.265][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.265][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.266][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.266][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.266][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.266][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.267][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.267][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.267][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 18:17:14.268][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.268][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 18:17:14.268][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.268][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.269][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.269][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.269][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.269][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.270][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:17:14.270][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.270][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.270][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 18:17:14.271][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.271][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.271][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.271][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.272][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.272][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.272][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.273][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.273][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.274][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.274][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.274][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.274][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.278][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 18:17:14.278][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.279][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:17:14.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.279][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.279][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.280][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.280][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.280][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.280][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:17:14.281][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.281][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.281][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 18:17:14.281][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.282][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.282][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.282][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.282][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.283][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.284][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.284][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.284][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.284][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.285][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.285][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.285][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.286][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.286][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.308][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 18:17:14.308][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 18:17:14.309][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 18:17:14.309][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 18:17:14.309][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 18:17:14.310][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:17:14.310][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 18:17:14.310][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 18:17:14.311][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 18:17:14.311][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:17:14.311][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:17:14.312][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 18:17:14.312][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 18:17:14.312][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 18:17:14.313][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 18:17:14.313][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:17:14.313][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 18:17:14.314][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 18:17:14.314][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 18:17:14.314][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 18:17:14.315][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 18:17:14.315][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 18:17:14.315][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 18:17:14.316][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 18:17:14.316][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 18:17:14.316][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 18:17:14.317][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 18:17:14.317][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 18:17:14.317][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 18:17:14.318][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 18:17:14.318][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 18:17:14.318][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 18:17:14.319][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 18:17:14.319][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 18:17:14.319][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 18:17:14.320][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 18:17:14.320][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 18:17:14.320][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 18:17:14.321][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 18:17:14.321][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 18:17:14.321][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 18:17:14.322][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 18:17:14.322][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 18:17:14.322][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 18:17:14.323][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 18:17:14.323][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 18:17:14.323][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 18:17:14.324][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 18:17:14.324][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 18:17:14.324][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 18:17:14.325][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 18:17:14.325][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 18:17:14.325][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 18:17:14.326][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 18:17:14.326][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 18:17:14.326][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 18:17:14.327][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 18:17:14.327][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 18:17:14.327][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 18:17:14.328][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 18:17:14.328][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 18:17:14.328][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 18:17:14.329][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 18:17:14.329][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 18:17:14.330][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 18:17:14.330][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 18:17:14.330][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 18:17:14.331][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 18:17:14.331][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 18:17:14.333][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 18:17:14.334][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 18:17:14.334][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 18:17:14.335][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 18:17:14.335][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 18:17:14.335][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 18:17:14.336][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 18:17:14.336][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 18:17:14.336][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 18:17:14.337][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 18:17:14.337][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 18:17:14.337][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 18:17:14.338][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 18:17:14.338][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 18:17:14.339][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 18:17:14.339][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:17:14.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.340][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.340][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.370][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 18:17:14.371][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.371][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.372][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.372][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.372][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.372][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.373][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 18:17:14.373][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.373][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.373][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 18:17:14.374][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.374][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.374][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 18:17:14.374][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 18:17:14.375][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 18:17:14.376][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 18:17:14.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.376][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.377][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.377][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:17:14.377][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 18:17:14.378][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.378][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.378][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.378][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.379][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 18:17:14.379][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:17:14.379][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:17:14.380][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:17:14.380][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:17:14.381][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.381][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 18:17:14.382][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.382][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.383][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.383][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.383][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 18:17:14.383][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 18:17:14.384][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:17:14.384][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 18:17:14.384][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.384][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.384][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 18:17:14.385][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 18:17:14.385][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.393][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.393][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.393][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.394][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.394][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.394][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 18:17:14.395][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.395][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-26 18:17:14.395][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.395][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.397][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.397][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.397][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:14.398][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.398][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:14.398][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:14.399][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:14.399][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:14.399][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:17:14.400][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-26 18:17:14.402][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.402][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-26 18:17:14.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.403][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.403][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-26 18:17:14.404][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 18:17:14.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 18:17:14.405][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-26 18:17:14.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 18:17:14.406][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 18:17:14.406][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:17:14.407][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:17:14.407][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:17:14.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:14.411][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.414][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.414][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.416][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.416][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.418][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.418][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.422][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.422][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.428][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.432][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.434][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.434][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.436][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.443][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.445][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.447][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.447][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.451][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.451][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.452][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:14.537][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-26 18:17:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 18:17:14.547][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 18:17:14.547][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 18:17:14.548][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 18:17:14.548][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 18:17:14.548][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.549][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.549][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 18:17:14.551][biodb::testContext]
biodb.INFO [2025-03-26 18:17:14.551][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:17:14.552][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-26 18:17:14.552][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 18:17:14.552][biodb::testContext]
biodb.INFO [2025-03-26 18:17:14.554][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:17:14.554][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 18:17:14.556][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.556][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 18:17:14.556][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.557][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 18:17:14.558][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.559][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 18:17:14.559][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.560][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 18:17:14.560][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 18:17:14.560][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.561][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 18:17:14.562][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 18:17:14.562][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.563][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 18:17:14.563][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.564][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 18:17:14.564][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 18:17:14.565][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 18:17:14.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.565][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 18:17:14.566][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.567][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 18:17:14.567][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 18:17:14.567][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 18:17:14.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.568][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:17:14.568][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 18:17:14.569][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 18:17:14.569][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 18:17:14.569][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 18:17:14.569][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 18:17:14.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.570][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 18:17:14.571][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 18:17:14.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.572][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 18:17:14.572][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 18:17:14.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.573][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 18:17:14.573][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 18:17:14.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.574][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 18:17:14.574][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 18:17:14.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.577][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 18:17:14.578][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 18:17:14.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.579][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 18:17:14.579][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 18:17:14.585][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 18:17:14.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.586][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 18:17:14.587][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 18:17:14.587][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 18:17:14.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.588][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 18:17:14.589][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.589][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 18:17:14.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.590][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.590][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.590][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.591][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:17:14.591][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.591][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.592][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 18:17:14.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.592][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.592][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.593][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.593][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.594][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.594][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.594][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.594][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.595][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.595][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.595][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.595][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.596][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.596][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 18:17:14.597][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.597][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:17:14.597][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.597][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.598][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.598][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.598][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.599][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:17:14.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.599][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.600][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 18:17:14.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.600][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.600][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.601][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.601][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.602][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.602][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.603][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.603][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.603][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.603][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.604][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.604][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 18:17:14.604][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.605][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 18:17:14.605][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.605][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.606][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.606][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.606][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.606][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.607][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 18:17:14.607][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.607][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.607][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 18:17:14.608][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.608][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.608][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.608][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.609][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.609][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.609][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.610][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.610][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.613][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.614][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.615][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.615][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 18:17:14.616][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.616][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 18:17:14.616][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.617][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.617][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.617][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.617][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.618][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.618][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 18:17:14.618][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.618][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.619][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 18:17:14.619][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.619][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.620][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.620][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.620][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 18:17:14.620][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.621][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.621][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.621][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.622][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.622][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.622][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.623][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.623][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.623][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.624][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.624][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.647][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 18:17:14.648][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 18:17:14.648][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 18:17:14.648][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 18:17:14.649][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 18:17:14.649][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:17:14.649][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 18:17:14.650][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 18:17:14.650][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 18:17:14.651][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:17:14.651][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:17:14.651][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 18:17:14.652][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 18:17:14.652][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 18:17:14.652][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 18:17:14.653][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:17:14.653][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 18:17:14.654][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 18:17:14.654][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 18:17:14.654][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 18:17:14.655][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 18:17:14.655][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 18:17:14.655][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 18:17:14.656][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 18:17:14.656][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 18:17:14.656][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 18:17:14.657][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 18:17:14.657][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 18:17:14.658][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 18:17:14.658][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 18:17:14.658][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 18:17:14.659][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 18:17:14.659][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 18:17:14.659][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 18:17:14.660][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 18:17:14.660][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 18:17:14.660][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 18:17:14.661][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 18:17:14.661][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 18:17:14.661][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 18:17:14.662][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 18:17:14.662][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 18:17:14.663][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 18:17:14.663][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 18:17:14.663][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 18:17:14.664][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 18:17:14.664][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 18:17:14.664][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 18:17:14.665][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 18:17:14.665][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 18:17:14.665][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 18:17:14.666][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 18:17:14.666][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 18:17:14.667][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 18:17:14.667][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 18:17:14.667][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 18:17:14.668][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 18:17:14.668][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 18:17:14.668][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 18:17:14.669][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 18:17:14.669][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 18:17:14.669][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 18:17:14.672][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 18:17:14.673][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 18:17:14.673][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 18:17:14.674][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 18:17:14.674][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 18:17:14.674][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 18:17:14.675][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 18:17:14.675][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 18:17:14.675][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 18:17:14.676][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 18:17:14.676][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 18:17:14.676][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 18:17:14.677][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 18:17:14.677][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 18:17:14.677][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 18:17:14.678][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 18:17:14.678][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 18:17:14.679][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 18:17:14.679][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 18:17:14.679][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 18:17:14.680][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 18:17:14.680][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 18:17:14.681][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 18:17:14.681][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 18:17:14.681][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.682][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 18:17:14.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.712][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 18:17:14.713][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.713][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.714][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.714][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.714][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 18:17:14.715][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.715][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 18:17:14.715][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.715][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.716][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 18:17:14.716][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 18:17:14.716][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.716][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 18:17:14.717][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 18:17:14.718][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 18:17:14.718][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 18:17:14.718][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 18:17:14.718][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 18:17:14.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.719][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 18:17:14.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 18:17:14.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 18:17:14.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 18:17:14.720][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:17:14.720][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 18:17:14.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.720][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 18:17:14.721][self$setPropertyValue]
biodb.DEBUG[2025-03-26 18:17:14.721][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 18:17:14.721][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 18:17:14.722][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 18:17:14.722][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 18:17:14.723][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 18:17:14.724][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.724][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 18:17:14.724][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.725][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.726][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 18:17:14.726][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 18:17:14.726][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 18:17:14.726][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 18:17:14.726][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 18:17:14.727][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 18:17:14.727][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 18:17:14.729][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 18:17:14.730][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 18:17:14.730][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.731][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.731][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.731][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 18:17:14.731][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 18:17:14.732][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 18:17:14.732][biodb::testThat]
biodb.INFO [2025-03-26 18:17:14.732][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-26 18:17:14.733][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 18:17:14.733][biodb::testThat]
biodb.DEBUG[2025-03-26 18:17:14.733][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 18:17:14.734][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-26 18:17:14.734][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-26 18:17:14.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.736][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:14.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.736][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:14.737][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:14.737][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:14.737][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:14.738][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:17:14.738][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:17:14.738][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-26 18:17:14.739][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-26 18:17:14.739][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 18:17:14.739][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.740][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 18:17:14.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 18:17:14.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 18:17:14.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-26 18:17:14.742][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:17:14.742][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:17:14.742][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:17:14.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:14.747][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.749][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.750][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.752][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.752][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.752][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.753][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.754][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.754][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.758][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.758][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.768][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.768][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.770][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.770][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.779][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.780][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.782][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.783][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.787][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.787][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.858][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:14.875][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 18:17:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:14.882][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:17:14.883][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:17:14.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:14.891][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-26 18:17:14.906][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 18:17:14.907][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:14.907][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 18:17:14.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-26 18:17:14.908][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 18:17:14.909][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 18:17:14.909][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 18:17:14.910][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 18:17:14.910][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 18:17:14.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:14.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:14.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:14.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:14.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:14.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:14.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:14.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.922][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.922][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.924][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.924][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.926][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.926][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.931][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.931][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:14.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.937][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.938][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.940][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.940][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.942][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.957][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.957][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.961][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.961][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 18:17:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:14.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 18:17:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.970][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 18:17:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 18:17:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 18:17:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 18:17:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 18:17:14.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 18:17:14.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.993][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:14.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 18:17:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 18:17:14.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:14.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 18:17:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 18:17:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.005][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 18:17:15.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 18:17:15.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 18:17:15.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 18:17:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:15.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:15.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 18:17:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 18:17:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.026][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 18:17:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 18:17:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 18:17:15.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 18:17:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.041][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.042][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 18:17:15.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 18:17:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 18:17:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.052][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-26 18:17:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.057][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:17:15.057][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:17:15.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:15.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:15.062][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 18:17:15.062][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-26 18:17:15.062][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-26 18:17:15.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.064][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:15.064][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.064][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:15.065][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:15.065][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:15.065][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:15.065][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:17:15.066][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:17:15.066][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:17:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.074][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.077][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:17:15.078][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:17:15.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:15.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:15.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.088][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-26 18:17:15.088][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:17:15.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:15.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 18:17:15.092][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 18:17:15.093][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-26 18:17:15.093][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-26 18:17:15.094][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.094][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.094][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 18:17:15.095][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 18:17:15.095][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 18:17:15.095][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 18:17:15.095][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 18:17:15.096][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 18:17:15.096][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 18:17:15.096][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 18:17:15.097][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 18:17:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.108][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-26 18:17:15.108][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-26 18:17:15.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:15.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 18:17:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 18:17:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 18:17:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 18:17:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 18:17:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 18:17:15.119][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 18:17:15.120][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 18:17:15.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 18:17:15.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 18:17:15.125][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 18:17:15.126][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 18:17:15.126][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 18:17:15.126][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 18:17:15.126][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 18:17:15.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 18:17:15.127][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 18:17:15.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 18:17:15.127][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 18:17:15.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.731   0.194  21.657

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings