Pierrick Roger
| Snapshot Date: 2025-03-25 13:40 -0400 (Tue, 25 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: d2b9830 |
| git_last_commit_date: 2024-10-29 11:06:39 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-26 11:48 -0400 (Wed, 26 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4783 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4533 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4463 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 205/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.13.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodbHmdb |
| Version: 1.13.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz |
| StartedAt: 2025-03-26 04:14:48 -0000 (Wed, 26 Mar 2025) |
| EndedAt: 2025-03-26 04:25:11 -0000 (Wed, 26 Mar 2025) |
| EllapsedTime: 622.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... INFO
installed size is 7.3Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c FileEntryMaker.cpp -o FileEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c TagDetector.cpp -o TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c XmlSplitter.cpp -o XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c extractXmlEntries.cpp -o extractXmlEntries.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-100-TagDetector.cpp -o test-100-TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-runner.cpp -o test-runner.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-26 04:24:45.872][biodb::testContext]
biodb.INFO [2025-03-26 04:24:45.875][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:24:45.877][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-26 04:24:45.878][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:24:45.879][biodb::testContext]
biodb.INFO [2025-03-26 04:24:45.882][biodb::testThat]
biodb.INFO [2025-03-26 04:24:45.883][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-26 04:24:45.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:45.885][biodb::testThat]
biodb.INFO [2025-03-26 04:24:46.025][biodb::testContext]
biodb.INFO [2025-03-26 04:24:46.027][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:24:46.028][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-26 04:24:46.029][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:24:46.030][biodb::testContext]
biodb.INFO [2025-03-26 04:24:46.043][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:24:46.046][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 04:24:46.057][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:24:46.058][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 04:24:46.060][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.065][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 04:24:46.103][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.109][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 04:24:46.111][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.116][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 04:24:46.118][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 04:24:46.120][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 04:24:46.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.125][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 04:24:46.127][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 04:24:46.129][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.134][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 04:24:46.135][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 04:24:46.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.141][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 04:24:46.142][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 04:24:46.143][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 04:24:46.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.149][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 04:24:46.150][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.155][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 04:24:46.157][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 04:24:46.158][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 04:24:46.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.163][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:24:46.164][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 04:24:46.166][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 04:24:46.167][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 04:24:46.169][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 04:24:46.170][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 04:24:46.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.175][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 04:24:46.176][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 04:24:46.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.181][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 04:24:46.183][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 04:24:46.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.188][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 04:24:46.189][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 04:24:46.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.194][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 04:24:46.196][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 04:24:46.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.201][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 04:24:46.202][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 04:24:46.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.207][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:24:46.208][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 04:24:46.213][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 04:24:46.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.218][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 04:24:46.220][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 04:24:46.221][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 04:24:46.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.229][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 04:24:46.277][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.300][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 04:24:46.301][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:24:46.304][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.305][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.306][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.309][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:24:46.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:24:46.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.313][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 04:24:46.314][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:24:46.315][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.317][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.318][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:24:46.318][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:24:46.318][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:24:46.318][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:24:46.318][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:24:46.319][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:24:46.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.323][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:24:46.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.333][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.334][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.336][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.337][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:46.338][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:46.339][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.341][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.342][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 04:24:46.345][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.346][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:24:46.347][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.348][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:24:46.350][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.351][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.352][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.354][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.355][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:24:46.356][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:24:46.358][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.359][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 04:24:46.360][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:24:46.362][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.363][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.364][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:24:46.364][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:24:46.364][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:24:46.364][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:24:46.364][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:24:46.366][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:24:46.367][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.368][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.369][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:24:46.371][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.373][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.374][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.376][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:46.377][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:46.378][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.379][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.381][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 04:24:46.384][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.385][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 04:24:46.386][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:24:46.389][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.392][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.393][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.394][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:24:46.396][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:24:46.397][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.398][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 04:24:46.400][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:24:46.401][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.402][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.403][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.405][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:24:46.406][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.409][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:24:46.410][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.411][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.412][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.414][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.415][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:46.416][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:46.417][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.419][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.420][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 04:24:46.423][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.424][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:24:46.425][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:24:46.428][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.431][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.432][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.433][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:24:46.435][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:24:46.436][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.437][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 04:24:46.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:24:46.440][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.443][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.444][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:24:46.445][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.448][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:24:46.449][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:46.450][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:46.452][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.453][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.454][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:46.455][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:46.457][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.458][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:46.463][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:24:46.464][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.578][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 04:24:46.584][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 04:24:46.586][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 04:24:46.588][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 04:24:46.590][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 04:24:46.592][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:24:46.594][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 04:24:46.595][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 04:24:46.597][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 04:24:46.599][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:24:46.601][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:24:46.603][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 04:24:46.605][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 04:24:46.607][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 04:24:46.609][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 04:24:46.611][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:24:46.613][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 04:24:46.614][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 04:24:46.616][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 04:24:46.618][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 04:24:46.620][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 04:24:46.622][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 04:24:46.624][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 04:24:46.626][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 04:24:46.628][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 04:24:46.630][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 04:24:46.632][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 04:24:46.634][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 04:24:46.636][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 04:24:46.638][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 04:24:46.640][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 04:24:46.642][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 04:24:46.644][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 04:24:46.646][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 04:24:46.647][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 04:24:46.649][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 04:24:46.651][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 04:24:46.653][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 04:24:46.655][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 04:24:46.657][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 04:24:46.659][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 04:24:46.661][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 04:24:46.663][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 04:24:46.665][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 04:24:46.667][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 04:24:46.669][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 04:24:46.670][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 04:24:46.672][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 04:24:46.674][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 04:24:46.676][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 04:24:46.679][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 04:24:46.681][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 04:24:46.683][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 04:24:46.685][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 04:24:46.686][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 04:24:46.688][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 04:24:46.690][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 04:24:46.692][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 04:24:46.694][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 04:24:46.696][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 04:24:46.698][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 04:24:46.700][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 04:24:46.702][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 04:24:46.704][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 04:24:46.706][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 04:24:46.708][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 04:24:46.710][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 04:24:46.712][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 04:24:46.714][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 04:24:46.715][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 04:24:46.717][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 04:24:46.719][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 04:24:46.721][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 04:24:46.723][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 04:24:46.725][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 04:24:46.727][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 04:24:46.729][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 04:24:46.731][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 04:24:46.733][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 04:24:46.735][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 04:24:46.737][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 04:24:46.739][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 04:24:46.741][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 04:24:46.750][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 04:24:46.752][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:24:46.756][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:24:46.757][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.760][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:24:46.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:46.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:46.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:46.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:46.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:46.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:24:46.956][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 04:24:46.970][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:24:46.973][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.974][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.975][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:24:46.983][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.985][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 04:24:46.986][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.987][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:24:46.989][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 04:24:46.990][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:24:46.992][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:46.993][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 04:24:46.995][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 04:24:46.996][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 04:24:46.998][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 04:24:46.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:24:46.999][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 04:24:46.999][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 04:24:47.001][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 04:24:47.002][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:47.003][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:47.004][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:24:47.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:24:47.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:24:47.008][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:24:47.010][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:24:47.010][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 04:24:47.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:47.012][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:47.014][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 04:24:47.015][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:24:47.023][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 04:24:47.026][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:24:47.028][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:24:47.030][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:24:47.032][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:24:47.061][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:24:47.062][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 04:24:47.068][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:24:47.073][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:24:47.078][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:24:47.079][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:24:47.081][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 04:24:47.082][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 04:24:47.084][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:24:47.084][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 04:24:47.085][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:24:47.086][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:24:47.088][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 04:24:47.089][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 04:24:47.090][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:24:47.125][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:24:47.126][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:24:47.128][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:24:47.130][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:24:47.131][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:24:47.132][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 04:24:47.142][biodb::testThat]
biodb.INFO [2025-03-26 04:24:47.144][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-26 04:24:47.145][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:47.146][biodb::testThat]
biodb.TRACE[2025-03-26 04:24:47.152][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-26 04:24:47.155][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:24:47.159][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:24:47.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:24:47.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:47.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:47.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:47.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:47.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:47.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:24:47.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.226][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.227][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.274][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.275][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.285][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.287][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.309][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.311][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.355][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.356][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.378][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:47.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:47.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:47.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:47.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.424][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.436][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:47.437][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:47.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:47.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:47.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.459][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:24:47.460][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:24:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.567][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:47.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:47.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.789][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:47.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:47.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:24:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:24:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:47.949][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 04:24:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:47.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.088][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.132][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.134][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.171][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.172][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.351][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.393][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.395][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.435][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.478][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.479][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.484][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.560][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.562][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.610][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.648][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:48.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:48.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:48.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.803][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.805][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.825][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:48.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:48.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.835][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.837][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:48.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.840][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.846][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.848][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:48.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.867][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.869][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:48.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.877][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:48.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.890][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:48.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.899][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.900][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:48.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.909][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:48.911][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:48.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:48.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:48.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:48.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:48.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:48.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.953][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:48.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:48.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:48.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:48.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:48.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:48.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:48.995][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.001][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.003][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.016][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 04:24:49.026][biodb::testThat]
biodb.INFO [2025-03-26 04:24:49.028][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-26 04:24:49.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:49.030][biodb::testThat]
biodb.DEBUG[2025-03-26 04:24:49.051][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-26 04:24:49.061][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-03-26 04:24:49.066][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-03-26 04:24:49.069][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-03-26 04:24:49.070][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-03-26 04:24:49.071][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-03-26 04:24:49.074][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-03-26 04:24:49.075][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 04:24:49.078][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 04:24:49.080][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 04:24:49.081][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-03-26 04:24:49.084][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker32a0e33126ab55marker".
biodb.TRACE[2025-03-26 04:24:49.086][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-03-26 04:24:49.087][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 04:24:49.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-26 04:24:49.091][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-03-26 04:24:49.092][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2025-03-26 04:24:49.094][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-26 04:24:49.095][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-03-26 04:24:49.113][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-03-26 04:24:49.114][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-03-26 04:24:49.115][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-03-26 04:24:49.117][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-03-26 04:24:49.127][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-03-26 04:24:49.128][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 04:24:49.130][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-26 04:24:49.131][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-03-26 04:24:49.133][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker32a0e34f84216cmarker".
biodb.TRACE[2025-03-26 04:24:49.135][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-03-26 04:24:49.136][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-03-26 04:24:49.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 04:24:49.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 04:24:49.142][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-26 04:24:49.144][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:24:49.179][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:24:49.181][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:24:49.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:24:49.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:24:49.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:24:49.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:24:49.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:24:49.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:24:49.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:24:49.209][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.220][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.221][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.226][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.231][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.233][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.243][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.244][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.266][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.267][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:49.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:49.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:49.337][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:49.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:49.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.371][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.375][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.382][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:49.383][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:49.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.412][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:24:49.414][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:24:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.439][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.449][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:24:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.454][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:24:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:24:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:24:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:24:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:24:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:24:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:49.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:49.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:24:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:24:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:24:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:24:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:24:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:24:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:24:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:24:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:24:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:24:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:24:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:24:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.790][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:24:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:24:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:24:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:49.843][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 04:24:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-26 04:24:49.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-26 04:24:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-26 04:24:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-26 04:24:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-26 04:24:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-26 04:24:49.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 04:24:49.872][biodb::testThat]
biodb.INFO [2025-03-26 04:24:49.873][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-26 04:24:49.875][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:49.876][biodb::testThat]
biodb.TRACE[2025-03-26 04:24:49.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.885][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:49.886][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-26 04:24:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:49.946][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-26 04:24:49.947][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-26 04:24:49.949][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 04:24:49.950][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 04:24:49.952][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:49.954][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:49.956][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:24:49.958][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:49.960][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:24:49.961][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:24:49.963][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:24:49.964][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:24:49.966][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:24:49.967][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:24:49.968][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:24:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:49.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.002][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:24:50.003][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:24:50.004][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 04:24:50.020][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.024][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.026][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-26 04:24:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.060][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-26 04:24:50.138][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 04:24:50.139][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-26 04:24:50.141][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-26 04:24:50.168][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.170][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.172][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:24:50.174][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.175][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:24:50.198][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:24:50.200][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:24:50.202][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:24:50.203][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:24:50.205][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:24:50.206][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:24:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:24:50.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:24:50.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.231][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:24:50.232][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:24:50.233][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 04:24:50.249][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.251][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.253][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.255][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-26 04:24:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.291][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-26 04:24:50.294][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-26 04:24:50.295][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-26 04:24:50.296][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-26 04:24:50.299][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.301][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.303][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:24:50.305][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.306][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:24:50.308][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:24:50.309][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:24:50.311][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:24:50.312][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:24:50.313][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:24:50.315][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:24:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:24:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.340][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:24:50.342][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:24:50.343][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-26 04:24:50.370][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.371][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-26 04:24:50.373][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:50.374][biodb::testThat]
biodb.TRACE[2025-03-26 04:24:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.420][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-26 04:24:50.421][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 04:24:50.422][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-26 04:24:50.425][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.427][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.429][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:24:50.430][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:24:50.432][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:24:50.433][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:24:50.435][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:24:50.436][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:24:50.437][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:24:50.439][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:24:50.440][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:24:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:24:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:24:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:24:50.465][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:24:50.466][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-26 04:24:50.485][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.487][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-26 04:24:50.488][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:50.489][biodb::testThat]
biodb.TRACE[2025-03-26 04:24:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:50.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:50.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-26 04:24:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-26 04:24:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:24:50.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:50.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-26 04:24:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:24:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 04:24:50.637][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.638][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-26 04:24:50.640][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:50.641][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.651][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.653][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-26 04:24:50.654][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:50.655][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.665][biodb::testThat]
biodb.INFO [2025-03-26 04:24:50.667][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-26 04:24:50.668][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:24:50.669][biodb::testThat]
biodb.DEBUG[2025-03-26 04:24:50.674][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-26 04:24:59.592][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-26 04:25:00.130][biodb::testThat]
biodb.INFO [2025-03-26 04:25:00.132][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-26 04:25:00.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:00.134][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:03.006][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-26 04:25:03.554][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:03.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:03.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.560][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:03.562][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:03.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.566][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:03.567][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:03.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.570][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 04:25:03.573][biodb::testThat]
biodb.INFO [2025-03-26 04:25:03.574][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-26 04:25:03.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:03.577][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:03.602][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-26 04:25:03.679][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 04:25:03.681][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:03.683][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 04:25:03.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-26 04:25:03.711][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-26 04:25:03.713][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-26 04:25:03.715][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:25:03.717][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:03.718][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:25:03.720][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:25:03.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:03.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:03.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:03.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:03.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:03.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:03.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:03.827][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-26 04:25:03.828][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-26 04:25:03.852][biodb::testThat]
biodb.INFO [2025-03-26 04:25:03.853][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-26 04:25:03.855][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:03.856][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:03.867][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-26 04:25:03.869][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-26 04:25:03.870][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 04:25:03.872][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:03.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 04:25:03.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-26 04:25:03.879][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-26 04:25:03.880][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-26 04:25:03.882][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:25:03.884][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:03.886][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:25:03.887][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:25:03.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:03.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:03.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:03.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:03.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:03.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:03.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:03.958][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-26 04:25:03.960][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-26 04:25:03.961][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-26 04:25:03.977][biodb::testThat]
biodb.INFO [2025-03-26 04:25:03.979][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-26 04:25:03.980][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:03.981][biodb::testThat]
biodb.INFO [2025-03-26 04:25:04.011][biodb::testThat]
biodb.INFO [2025-03-26 04:25:04.012][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-26 04:25:04.014][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:04.015][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:04.018][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.020][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.022][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:04.024][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.025][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:04.027][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:04.029][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:04.030][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:04.031][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-26 04:25:04.041][biodb::testThat]
biodb.INFO [2025-03-26 04:25:04.043][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-26 04:25:04.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:04.045][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:04.048][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.050][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.052][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:04.054][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.056][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:04.057][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:04.059][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:04.060][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:04.062][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-26 04:25:04.073][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:04.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:04.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:04.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:04.079][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:04.080][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:04.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:04.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:04.084][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:04.086][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:04.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:04.088][ef$get] fields variable is a list.
biodb.INFO [2025-03-26 04:25:04.089][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 04:25:04.091][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 04:25:04.110][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 04:25:04.112][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 04:25:04.113][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.115][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.118][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 04:25:04.123][biodb::testContext]
biodb.INFO [2025-03-26 04:25:04.125][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:25:04.126][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-26 04:25:04.127][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:25:04.129][biodb::testContext]
biodb.INFO [2025-03-26 04:25:04.134][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:25:04.136][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 04:25:04.141][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:04.143][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 04:25:04.144][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.150][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 04:25:04.151][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.156][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 04:25:04.158][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.163][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 04:25:04.164][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 04:25:04.166][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 04:25:04.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.171][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 04:25:04.172][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 04:25:04.174][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.179][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 04:25:04.180][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 04:25:04.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.185][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 04:25:04.187][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 04:25:04.188][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 04:25:04.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.193][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 04:25:04.195][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.200][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 04:25:04.201][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 04:25:04.203][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 04:25:04.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.208][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:25:04.209][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 04:25:04.211][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 04:25:04.212][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 04:25:04.214][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 04:25:04.215][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 04:25:04.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.220][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 04:25:04.222][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 04:25:04.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.227][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 04:25:04.228][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 04:25:04.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.233][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 04:25:04.235][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 04:25:04.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.240][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 04:25:04.242][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 04:25:04.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.247][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 04:25:04.248][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 04:25:04.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.253][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:25:04.262][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 04:25:04.267][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 04:25:04.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.273][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 04:25:04.274][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 04:25:04.275][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 04:25:04.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.280][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 04:25:04.283][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.284][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 04:25:04.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.287][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:04.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.291][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.292][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.293][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:25:04.295][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:04.296][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.297][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 04:25:04.299][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:04.300][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.301][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.303][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:04.303][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:25:04.303][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:25:04.303][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:25:04.303][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:25:04.304][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:04.305][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.307][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.308][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:04.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.312][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.313][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.314][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.315][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.317][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.318][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.320][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 04:25:04.322][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.324][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:25:04.325][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.326][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:04.327][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.329][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.330][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.331][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.333][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:25:04.334][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:04.336][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.337][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 04:25:04.338][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:04.340][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.342][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:04.342][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:25:04.342][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:25:04.342][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:25:04.342][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:25:04.344][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:04.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.347][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:04.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.353][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.356][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.358][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.359][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 04:25:04.362][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.363][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 04:25:04.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.366][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:04.367][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.368][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.370][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.371][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.372][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:25:04.374][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:04.375][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.376][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 04:25:04.378][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:04.379][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.380][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.382][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.383][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:04.384][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.385][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.387][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:04.388][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.389][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.390][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.392][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.393][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.394][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.396][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.397][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.399][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 04:25:04.401][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.402][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:25:04.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.412][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:04.414][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.415][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.417][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.418][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.420][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:25:04.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:04.422][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.424][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 04:25:04.425][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:04.426][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.428][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.429][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.430][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:04.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.433][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.434][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:04.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.438][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.439][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.440][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.442][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.443][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.444][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.446][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:04.447][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.552][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 04:25:04.561][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 04:25:04.563][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 04:25:04.565][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 04:25:04.567][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 04:25:04.569][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:25:04.571][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 04:25:04.573][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 04:25:04.575][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 04:25:04.576][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:25:04.578][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:25:04.580][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 04:25:04.582][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 04:25:04.584][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 04:25:04.586][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 04:25:04.588][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:25:04.590][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 04:25:04.592][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 04:25:04.593][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 04:25:04.595][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 04:25:04.597][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 04:25:04.599][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 04:25:04.601][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 04:25:04.603][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 04:25:04.605][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 04:25:04.607][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 04:25:04.609][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 04:25:04.611][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 04:25:04.613][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 04:25:04.615][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 04:25:04.617][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 04:25:04.619][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 04:25:04.621][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 04:25:04.623][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 04:25:04.624][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 04:25:04.626][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 04:25:04.628][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 04:25:04.630][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 04:25:04.632][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 04:25:04.634][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 04:25:04.636][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 04:25:04.638][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 04:25:04.640][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 04:25:04.642][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 04:25:04.644][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 04:25:04.646][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 04:25:04.648][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 04:25:04.650][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 04:25:04.651][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 04:25:04.653][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 04:25:04.655][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 04:25:04.657][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 04:25:04.659][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 04:25:04.661][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 04:25:04.663][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 04:25:04.665][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 04:25:04.667][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 04:25:04.669][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 04:25:04.671][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 04:25:04.673][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 04:25:04.675][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 04:25:04.676][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 04:25:04.678][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 04:25:04.680][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 04:25:04.682][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 04:25:04.684][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 04:25:04.686][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 04:25:04.688][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 04:25:04.690][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 04:25:04.692][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 04:25:04.694][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 04:25:04.696][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 04:25:04.698][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 04:25:04.707][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 04:25:04.709][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 04:25:04.711][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 04:25:04.713][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 04:25:04.715][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 04:25:04.717][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 04:25:04.719][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 04:25:04.721][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 04:25:04.723][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 04:25:04.725][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 04:25:04.727][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 04:25:04.729][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:25:04.731][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:04.732][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.734][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:04.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:04.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:04.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:04.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:04.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:04.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:04.889][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 04:25:04.891][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:04.893][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.895][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.896][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.897][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:04.899][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.900][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 04:25:04.901][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.903][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.904][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 04:25:04.905][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:04.906][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.908][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 04:25:04.909][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 04:25:04.910][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 04:25:04.912][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:04.913][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:04.913][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 04:25:04.913][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 04:25:04.915][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 04:25:04.916][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.917][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.918][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:04.920][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:04.921][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:04.922][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:04.923][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:25:04.923][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 04:25:04.925][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.926][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.927][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:04.929][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:04.930][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 04:25:04.932][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:25:04.934][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:25:04.937][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:25:04.939][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:25:04.943][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:04.944][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 04:25:04.946][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:04.948][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:04.949][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:04.951][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:04.952][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 04:25:04.954][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 04:25:04.955][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:25:04.955][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 04:25:04.956][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:04.958][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:04.959][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 04:25:04.960][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 04:25:04.961][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:04.963][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:04.971][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:04.973][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:04.975][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:04.977][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:04.978][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 04:25:04.981][biodb::testThat]
biodb.INFO [2025-03-26 04:25:04.982][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-26 04:25:04.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:04.985][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:04.991][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.994][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.996][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:04.998][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:04.999][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:05.001][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:05.003][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:05.004][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:05.022][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:25:05.027][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-26 04:25:05.034][biodb::testThat]
biodb.INFO [2025-03-26 04:25:05.036][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-26 04:25:05.037][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:05.038][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:05.041][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-26 04:25:05.043][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 04:25:05.045][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:05.047][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 04:25:05.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-26 04:25:05.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 04:25:05.054][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 04:25:05.055][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:25:05.057][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:25:05.059][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:25:05.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:05.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:05.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:05.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:05.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:05.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:05.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.091][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.092][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.095][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.102][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.104][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.114][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.116][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.138][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.140][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.163][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.173][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.174][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.192][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.194][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:05.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:05.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:05.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:05.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:05.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:05.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:05.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:05.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.260][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:05.261][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:05.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:05.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:05.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.282][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:05.283][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:05.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.337][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:05.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:05.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:05.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:05.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:05.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:05.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:05.713][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-26 04:25:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:05.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:05.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-26 04:25:05.738][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 04:25:05.740][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 04:25:05.741][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 04:25:05.742][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 04:25:05.744][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:05.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:05.746][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:05.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:05.748][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 04:25:05.754][biodb::testContext]
biodb.INFO [2025-03-26 04:25:05.756][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:25:05.757][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-26 04:25:05.758][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-26 04:25:05.759][biodb::testContext]
biodb.INFO [2025-03-26 04:25:05.764][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:25:05.774][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-26 04:25:05.779][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:05.781][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-26 04:25:05.782][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.787][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-26 04:25:05.788][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.793][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-26 04:25:05.795][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.800][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-26 04:25:05.801][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-26 04:25:05.802][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-26 04:25:05.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.807][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-26 04:25:05.809][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-26 04:25:05.810][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.815][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-26 04:25:05.816][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-26 04:25:05.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.821][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-26 04:25:05.823][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-26 04:25:05.824][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-26 04:25:05.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.829][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-26 04:25:05.830][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.835][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-26 04:25:05.837][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-26 04:25:05.838][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-26 04:25:05.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.843][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:25:05.844][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-26 04:25:05.846][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-26 04:25:05.847][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-26 04:25:05.848][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-26 04:25:05.850][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-26 04:25:05.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.855][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-26 04:25:05.856][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-26 04:25:05.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.861][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-26 04:25:05.863][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-26 04:25:05.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.867][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-26 04:25:05.869][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-26 04:25:05.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.874][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-26 04:25:05.875][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-26 04:25:05.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.880][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-26 04:25:05.882][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-26 04:25:05.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.887][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-26 04:25:05.888][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-26 04:25:05.892][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-26 04:25:05.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.897][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-26 04:25:05.899][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-26 04:25:05.900][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-26 04:25:05.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:05.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:05.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:05.905][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-26 04:25:05.908][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.909][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-26 04:25:05.911][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.912][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:05.913][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.915][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.924][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.925][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.927][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:25:05.928][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:05.930][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.931][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-26 04:25:05.932][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:05.934][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.935][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.937][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:05.937][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:25:05.937][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:25:05.937][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:25:05.937][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:25:05.938][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:05.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:05.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:05.942][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:05.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:05.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:05.946][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.947][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.949][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:05.950][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:05.951][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.953][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.954][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-26 04:25:05.957][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.958][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:25:05.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.961][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:05.962][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.964][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.965][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.966][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.968][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:25:05.969][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:05.970][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.972][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-26 04:25:05.973][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:05.974][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.976][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.977][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:05.977][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-26 04:25:05.977][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-26 04:25:05.977][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-26 04:25:05.977][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-26 04:25:05.979][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:05.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:05.981][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:05.982][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:05.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:05.985][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:05.986][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:05.988][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.989][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:05.990][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:05.991][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:05.993][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:05.994][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-26 04:25:05.997][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:05.998][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-26 04:25:06.000][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.001][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:06.002][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.004][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.005][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.006][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.008][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-26 04:25:06.009][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:06.011][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.012][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-26 04:25:06.013][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:06.015][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.016][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.017][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.019][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:06.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.022][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:06.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.026][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.028][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.029][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:06.030][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:06.031][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.033][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.034][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-26 04:25:06.037][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.038][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-26 04:25:06.040][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.041][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:06.042][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.045][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.046][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.048][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-26 04:25:06.049][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:06.050][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.052][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-26 04:25:06.053][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:06.054][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.056][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.057][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.059][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-26 04:25:06.060][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.061][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:06.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.074][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.075][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.077][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:06.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:06.079][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.081][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.083][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:06.084][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.191][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-26 04:25:06.193][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-26 04:25:06.195][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-26 04:25:06.197][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-26 04:25:06.199][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-26 04:25:06.201][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:25:06.203][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-26 04:25:06.205][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-26 04:25:06.214][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-26 04:25:06.216][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:25:06.219][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:25:06.220][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-26 04:25:06.222][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-26 04:25:06.224][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-26 04:25:06.226][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-26 04:25:06.228][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:25:06.230][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-26 04:25:06.232][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-26 04:25:06.234][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-26 04:25:06.236][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-26 04:25:06.238][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-26 04:25:06.240][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-26 04:25:06.242][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-26 04:25:06.244][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-26 04:25:06.246][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-26 04:25:06.248][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-26 04:25:06.250][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-26 04:25:06.252][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-26 04:25:06.254][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-26 04:25:06.256][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-26 04:25:06.258][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-26 04:25:06.260][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-26 04:25:06.262][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-26 04:25:06.264][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-26 04:25:06.266][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-26 04:25:06.267][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-26 04:25:06.269][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-26 04:25:06.271][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-26 04:25:06.273][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-26 04:25:06.275][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-26 04:25:06.277][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-26 04:25:06.279][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-26 04:25:06.281][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-26 04:25:06.283][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-26 04:25:06.285][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-26 04:25:06.287][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-26 04:25:06.289][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-26 04:25:06.291][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-26 04:25:06.293][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-26 04:25:06.295][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-26 04:25:06.297][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-26 04:25:06.299][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-26 04:25:06.301][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-26 04:25:06.303][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-26 04:25:06.305][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-26 04:25:06.307][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-26 04:25:06.309][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-26 04:25:06.311][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-26 04:25:06.313][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-26 04:25:06.315][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-26 04:25:06.317][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-26 04:25:06.319][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-26 04:25:06.321][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-26 04:25:06.323][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-26 04:25:06.325][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-26 04:25:06.327][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-26 04:25:06.329][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-26 04:25:06.331][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-26 04:25:06.333][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-26 04:25:06.335][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-26 04:25:06.337][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-26 04:25:06.339][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-26 04:25:06.341][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-26 04:25:06.343][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-26 04:25:06.345][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-26 04:25:06.347][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-26 04:25:06.348][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-26 04:25:06.350][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-26 04:25:06.360][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-26 04:25:06.362][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-26 04:25:06.364][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-26 04:25:06.366][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-26 04:25:06.368][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-26 04:25:06.370][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-26 04:25:06.372][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-26 04:25:06.374][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-26 04:25:06.375][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.377][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-26 04:25:06.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:06.530][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-26 04:25:06.532][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:06.535][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.536][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.537][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.539][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-26 04:25:06.540][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.542][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-26 04:25:06.543][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.544][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.546][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-26 04:25:06.547][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-26 04:25:06.548][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.550][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-26 04:25:06.551][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-26 04:25:06.552][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-26 04:25:06.554][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-26 04:25:06.555][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-26 04:25:06.555][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-26 04:25:06.555][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-26 04:25:06.557][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-26 04:25:06.558][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.559][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.561][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-26 04:25:06.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-26 04:25:06.563][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-26 04:25:06.565][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-26 04:25:06.566][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:25:06.566][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-26 04:25:06.567][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:06.569][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:06.570][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-26 04:25:06.571][self$setPropertyValue]
biodb.DEBUG[2025-03-26 04:25:06.573][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-26 04:25:06.575][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-26 04:25:06.577][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-26 04:25:06.580][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-26 04:25:06.582][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-26 04:25:06.586][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:06.588][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-26 04:25:06.589][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:06.591][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:06.593][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:06.595][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:06.597][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-26 04:25:06.598][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-26 04:25:06.599][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-26 04:25:06.599][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-26 04:25:06.601][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-26 04:25:06.602][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-26 04:25:06.603][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-26 04:25:06.605][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-26 04:25:06.606][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-26 04:25:06.608][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:06.610][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:06.611][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:06.613][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-26 04:25:06.615][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-26 04:25:06.616][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-26 04:25:06.618][biodb::testThat]
biodb.INFO [2025-03-26 04:25:06.620][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-26 04:25:06.621][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-26 04:25:06.622][biodb::testThat]
biodb.DEBUG[2025-03-26 04:25:06.625][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 04:25:06.627][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-26 04:25:06.628][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-26 04:25:06.632][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:06.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:06.636][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:06.638][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:06.647][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:06.649][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:06.651][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:06.652][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:06.654][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:25:06.655][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:25:06.656][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-26 04:25:06.658][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-26 04:25:06.660][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 04:25:06.662][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:06.664][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 04:25:06.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-26 04:25:06.668][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 04:25:06.671][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-26 04:25:06.672][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:25:06.674][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:25:06.676][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:25:06.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:06.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:06.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:06.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:06.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:06.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:06.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:06.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:06.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:06.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.708][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:06.709][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:06.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.720][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.721][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.732][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.734][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.738][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:06.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:06.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.756][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:06.758][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:06.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:06.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:06.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:06.770][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:06.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:06.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:06.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.792][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:06.793][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:06.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.828][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:06.830][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:06.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:06.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:06.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.845][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:06.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:06.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.866][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:06.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:06.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:06.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:06.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:06.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:06.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.903][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:06.905][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:06.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:06.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:06.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.929][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:06.930][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:06.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:06.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:06.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:06.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.005][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.349][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:07.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:07.401][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-26 04:25:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:07.425][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:25:07.426][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:25:07.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:07.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:07.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:07.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:07.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:07.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:07.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:07.442][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-26 04:25:07.444][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-26 04:25:07.446][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:07.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-26 04:25:07.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-26 04:25:07.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-26 04:25:07.463][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-26 04:25:07.464][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-26 04:25:07.466][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-26 04:25:07.468][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-26 04:25:07.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:07.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:07.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:07.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:07.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:07.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:07.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:07.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.499][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.500][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.510][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.512][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.522][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.524][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.545][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.547][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.558][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.582][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.592][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.593][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.604][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.628][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.651][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.670][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.693][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:07.694][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-26 04:25:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.726][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-26 04:25:07.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.737][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-26 04:25:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-26 04:25:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-26 04:25:07.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-26 04:25:07.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-26 04:25:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-26 04:25:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:07.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-26 04:25:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-26 04:25:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-26 04:25:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-26 04:25:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-26 04:25:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-26 04:25:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:07.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:07.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-26 04:25:07.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.985][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-26 04:25:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:07.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:07.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:08.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:08.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-26 04:25:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-26 04:25:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-26 04:25:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-26 04:25:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:08.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-26 04:25:08.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-26 04:25:08.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.082][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-26 04:25:08.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-26 04:25:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-26 04:25:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.129][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-26 04:25:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.136][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.152][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:25:08.153][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:25:08.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:08.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:08.174][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 04:25:08.175][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-26 04:25:08.177][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-26 04:25:08.179][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.181][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.183][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:08.185][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.186][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:08.188][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:08.189][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:08.190][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:08.192][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:25:08.193][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:25:08.194][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:25:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.245][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:25:08.246][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:25:08.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:08.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:08.262][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.301][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-26 04:25:08.302][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:25:08.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:08.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-26 04:25:08.323][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-26 04:25:08.324][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-26 04:25:08.326][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-26 04:25:08.328][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.330][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.332][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-26 04:25:08.334][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-26 04:25:08.335][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-26 04:25:08.337][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-26 04:25:08.338][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-26 04:25:08.340][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-26 04:25:08.341][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-26 04:25:08.342][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-26 04:25:08.344][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-26 04:25:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.389][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.395][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-26 04:25:08.396][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-26 04:25:08.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:08.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-26 04:25:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-26 04:25:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-26 04:25:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-26 04:25:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-26 04:25:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-26 04:25:08.453][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-26 04:25:08.454][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-26 04:25:08.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-26 04:25:08.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-26 04:25:08.479][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-26 04:25:08.481][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-26 04:25:08.483][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-26 04:25:08.484][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-26 04:25:08.486][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-26 04:25:08.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-26 04:25:08.488][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-26 04:25:08.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-26 04:25:08.491][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-26 04:25:08.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.236 0.535 25.726