Mustafa Erhan Ozer
| Snapshot Date: 2025-03-20 13:00 -0400 (Thu, 20 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-24 12:07 -0400 (Mon, 24 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4763 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4521 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4448 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4414 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-21 06:35:20 -0400 (Fri, 21 Mar 2025) |
| EndedAt: 2025-03-21 06:41:09 -0400 (Fri, 21 Mar 2025) |
| EllapsedTime: 348.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28 ucrt) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5825,4285,1968,189,5019,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79944,1649,1268,5364,2645,1356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,5830,728,54344,4311,1508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,84334,3486,2266,3708,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 708,27344,706,5293,55034,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,2992,407008,23038,2194,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,19,9997,406938,7019,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,1629,6576,718,1769,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,3065,11096,84342,7424,22868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,5621,5781,51128,6576,2194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,2166,79144,131118,2947,4973
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,56945,7077,846,3383,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,9927,8678,7078,27429,2628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,5745,5345,10128,112817,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9076,5538,37,3240,4358,3283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,6236,10686,1348,5629,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,3156,10560,406934,2310,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5190,84833,4889,5925,10295,5184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22978,3458,54600,79661,6906,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,81704,929,5092,10128,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1650,11254,2998,2804,7376,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,5277,8942,583,2752,4843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,54576,3952,56997,2992,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388962,105372280,3073,8665,5787,26235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,840,26517,292,91574,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,54802,120227,5194,2786,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,116085,132001,10226,728,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,3759,2572,2539,4318,81034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2678,549,1392,7942,3032,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,3958,212,183,5214,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,285362,4089,148738,92935,5192
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,84706,7320,4855,2314,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,4744,1022,4709,6898,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 506,4886,3952,801,207,10020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2100,7450,5295,4609,56606,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,63899,5092,3779,4886,3098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,2820,5592,8879,1329,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90480,10352,52,55788,3773,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 33,25821,55572,26503,155,7345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80224,779,1436,23236,123099,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,1591,166785,2064,8504,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7084,2247,1557,51,5345,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80224,123099,3250,6821,6199,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,2778,4609,10128,5241,5444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,1586,57505,25915,10382,3329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 356,5805,55024,840,197,1581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,10165,5243,138050,2788,6576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,81689,210,5465,9429,5617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,55858,5230,4543,4853,29928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,1581,9377,64131,1803,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,23175,57001,51181,4719,1606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,10019,79087,583,201305,9076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7018,1591,768239,3382,29929,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85476,3992,2696,161247,55967,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 249,1757,652,65080,125988,353500
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,2786,5009,2030,3953,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6492,208,4709,152926,1968,199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,8854,25821,64919,275,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1393,7376,3174,5743,57104,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 113235,199,3077,64919,2788,8665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,79133,29843,506,406913,7052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5825,4720,133396,7421,6908,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,55037,25813,1281,5194,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,11255,51608,1080,407007,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8504,9382,55343,6319,7132,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,23543,5467,54552,1497,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,4299,84061,650,37,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,10842,7381,8803,51441,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3481,9104,91869,2908,387787,3119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,3482,5096,151306,708,5798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,7276,29968,9095,111240474,9692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92667,5139,347,6262,656,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,7840,587,2516,768239,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,3312,2693,5328,6789,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,23654,836,10560,23291,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 48,2161,6678,406913,836,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,4306,90865,1208,6389,131118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3060,9180,55343,9479,2597,570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5443,200539,5071,4049,265,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,3155,4306,6834,7389,8567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,23556,656,1802,10102,80070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 434,2653,23543,2760,6794,3712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,6908,1544,1786,2180,5770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85476,729230,1361,132,79776,779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90480,10686,27429,6794,50507,4967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3482,91647,1345,56938,10667,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,2792,2642,5345,407024,1678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,3481,8799,5188,4843,440138
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 514,145264,7289,3557,6261,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,7097,355,5257,793,7100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,7409,23400,5962,5069,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,6536,3708,6535,7056,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,4684,8659,2720,132001,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,2495,27329,22978,9971,10020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116228,152926,25974,8431,197322,6519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,5367,2639,3062,217,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,26175,7030,5080,4843,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338328,3065,3101,1282,7422,138050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,10059,389692,9945,1621,8802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,266,795,1471,5327,51316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83854,1537,128486,3554,4728,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,23516,29880,2683,2597,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,3329,1544,7157,2776,10616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,650,3978,11231,6390,7025
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,201595,811,1230,29881,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,2787,4704,79633,10580,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,5445,617,3586,189,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,2305,3115,4879,7057,3481
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2896,4552,2778,336,7025,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,5826,5331,2683,3728,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3784,1392,6891,4878,1843,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10013,1738,406938,1270,3954,824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27125,7220,4724,2678,22868,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,4285,29881,283120,6616,1444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 291,1442,6696,51024,51458,51601
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
71.09 1.93 76.90
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.61 | 0.08 | 1.53 | |