Mustafa Erhan Ozer
| Snapshot Date: 2025-03-20 13:00 -0400 (Thu, 20 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-24 12:09 -0400 (Mon, 24 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4763 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4521 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4448 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4414 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-21 10:05:58 -0400 (Fri, 21 Mar 2025) |
| EndedAt: 2025-03-21 10:15:43 -0400 (Fri, 21 Mar 2025) |
| EllapsedTime: 585.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 1.392 0.082 8.085
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 7407,3417,1363,9572,2305,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,5571,574447,28234,55340,51092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,1893,51144,54600,655,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10157,113235,231,4700,2063,64919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2158,652,5194,5372,2517,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1116,3157,4728,54968,10841,779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,34,3425,2169,2864,3032
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,54809,28957,153642,384,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5092,51092,4313,5442,599,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,203068,105372280,1786,91452,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,94235,2334,79934,170302,4967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79001,3373,574447,477,653509,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1149,91647,3158,85569,1621,1605
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,115286,1072,4318,5730,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,55163,5970,6402,2056,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 268,10577,51004,2653,51601,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 594,5078,1346,5367,5860,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6199,1737,196385,7100,1281,6462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,388372,7480,84062,5345,2950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10935,2475,7025,5468,3673,958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3958,26517,8648,6584,4828,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,4000,4143,4683,2516,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653,9919,1339,4137,55970,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4779,5789,886,55902,4357,5190
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,219,358,10157,3155,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,6476,6462,1282,5288,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6464,54704,5188,10243,5019,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,23409,4724,4853,6387,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,3145,201595,5743,5192,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9692,1337,471,3551,1361,3329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5588,196385,197322,1786,11232,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,4719,4728,10352,1232,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1116,3358,1329,53335,6564,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,9054,5631,5367,2690,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,291,83854,4118,60386,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,6811,54576,2641,7384,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1490,85479,1593,599,201305,941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2475,2157,7841,1514,79585,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6352,2835,3174,3673,51167,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,1634,5288,1281,51548,11222
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4143,9370,1803,2244,8772,1394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3460,5054,411,2260,51083,9180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,2169,26060,1893,4722,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,339,5925,10935,83854,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,203859,1371,435,1601,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1524,57192,3557,6811,152926,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 48,1508,387082,81033,10128,768239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3598,51,54968,347,6261,8659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,7471,3356,6774,498,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3158,63931,7019,7407,55644,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,6834,5581,79053,84889,1524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130120,3481,50943,5770,158,2731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,5781,56997,9560,2944,1672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,10102,3418,57505,4285,213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,8651,583,57001,407045,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,51083,9409,9692,55630,79068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 58528,54539,2908,6811,7038,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653,9021,2334,9630,790,1351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11096,10724,10094,8942,3627,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3795,3156,11035,1056,819,5160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,51300,191,4714,1175,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,11232,2806,3099,80267,22820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,2642,3645,57761,1514,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,8600,28958,7347,847,4709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55486,85365,8202,8567,116519,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51241,249,4864,55331,5741,11254
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84557,5702,55270,2937,8694,131118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 427,10019,3032,1582,1468,9968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407021,493,4855,6448,9560,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,540,6515,84572,5265,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,3709,8639,6183,57192,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,55863,8842,5261,5367,5825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8842,6236,22796,2952,3899,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60528,56652,656,6648,5563,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,1401,149775,5506,10644,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,2834,5122,51079,10841,5660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9945,84833,4925,1893,2628,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,599,23129,2890,2835,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1843,686,406938,268,10935,84705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,55526,23175,2696,51116,84275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,406937,3554,383,2932,5473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,26235,26517,2694,6609,54902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65985,4684,4160,6648,1646,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,8879,4976,7390,6462,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,8942,11136,229,80270,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3899,25821,1509,574447,3481,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,4137,1950,10423,1149,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3417,537,84557,6609,3990,81034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2571,105372280,7054,10062,6569,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,2571,84334,6718,3685,4851
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3060,9056,268,54549,2729,2110
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,5053,7025,10577,57761,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,29078,7407,4654,795,285126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5476,51204,55163,9997,138050,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11096,4656,3651,9365,8665,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,8772,8743,1594,10842,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5507,2690,5581,7424,1352,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,1806,6514,5562,3767,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,30061,100128525,407045,4319,6513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,256471,90480,2791,6391,4544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,2786,54915,23410,4358,383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,10094,5160,5078,4000,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 122961,540,4668,2516,55503,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133396,83985,2791,160287,53632,5080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,3875,4709,3033,54982,6833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,1351,652,10845,79934,3791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6263,32,3113,5270,10753,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,406934,54578,57620,5369,160428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9559,5321,5972,55572,149461,1629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,6718,6319,4713,4889,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2806,51608,151,8772,6775,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,5599,115286,3251,1956,3954
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,6354,5919,185,137682,1893
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,10157,788,7385,2834,10874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51144,5176,51478,114548,185,6648
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
107.431 2.102 111.440
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.392 | 0.082 | 8.085 | |