Package: nethet

Version: 1.19.0

Command: rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nethet_1.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nethet.buildbin-libdir

StartedAt: 2020-01-16 11:23:58 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 11:24:23 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 24.7 seconds

RetCode: 0

Status:  OK

PackageFile: nethet_1.19.0.tgz

PackageFileSize: 771.9 KiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nethet_1.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nethet.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=nethet.buildbin-libdir nethet_1.19.0.tar.gz'
>>>>>>> 

* installing *source* package ‘nethet’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c betamat_diffnet.c -o betamat_diffnet.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o nethet.so betamat_diffnet.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/nethet.buildbin-libdir/00LOCK-nethet/00new/nethet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘mclust::dmvnorm’ by ‘mvtnorm::dmvnorm’ when loading ‘nethet’
Warning: replacing previous import ‘multtest::update’ by ‘stats::update’ when loading ‘nethet’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘mclust::dmvnorm’ by ‘mvtnorm::dmvnorm’ when loading ‘nethet’
Warning: replacing previous import ‘multtest::update’ by ‘stats::update’ when loading ‘nethet’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘mclust::dmvnorm’ by ‘mvtnorm::dmvnorm’ when loading ‘nethet’
Warning: replacing previous import ‘multtest::update’ by ‘stats::update’ when loading ‘nethet’
** testing if installed package keeps a record of temporary installation path
* DONE (nethet)


>>>>>>> 
>>>>>>> FIXING LINKS FOR nethet.buildbin-libdir/nethet/libs//nethet.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "nethet.buildbin-libdir/nethet/libs//nethet.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "nethet.buildbin-libdir/nethet/libs//nethet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "nethet.buildbin-libdir/nethet/libs//nethet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "nethet.buildbin-libdir/nethet/libs//nethet.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "nethet.buildbin-libdir/nethet/libs//nethet.so"