Nicolas Staedler
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/nethet |
| Branch: RELEASE_3_11 |
| Last Commit: 0c592f9 |
| Last Changed Date: 2020-09-29 16:40:59 -0400 (Tue, 29 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:16 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE nethet PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1187/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| nethet 1.20.1 Nicolas Staedler
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: nethet |
| Version: 1.20.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/nethet_1.20.1.tar.gz && rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nethet.buildbin-libdir nethet_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL nethet_1.20.1.zip && rm nethet_1.20.1.tar.gz nethet_1.20.1.zip |
| StartedAt: 2020-10-16 18:54:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:56:07 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 71.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/nethet_1.20.1.tar.gz && rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nethet.buildbin-libdir nethet_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL nethet_1.20.1.zip && rm nethet_1.20.1.tar.gz nethet_1.20.1.zip
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install for i386
* installing *source* package 'nethet' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/nethet.buildbin-libdir/00LOCK-nethet/00new/nethet/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** help
*** installing help indices
converting help for package 'nethet'
finding HTML links ... done
EXPStep.mix html
MStepGlasso html
NetHet-package html
agg.pval html
agg.score.iriz.scale html
agg.score.iriz.shift html
aggpval html
aic.glasso html
beta.mat html
beta.mat.diffregr html
bic.glasso html
buildDotPlotDataFrame html
bwprun_mixglasso html
cv.fold html
cv.glasso html
diffnet_multisplit html
diffnet_pval html
diffnet_singlesplit html
diffregr_multisplit html
diffregr_pval html
diffregr_singlesplit html
dot_plot html
error.bars html
est2.my.ev2 html
est2.my.ev2.diffregr html
est2.my.ev3 html
est2.my.ev3.diffregr html
est2.ww.mat.diffregr html
est2.ww.mat2 html
est2.ww.mat2.diffregr html
export_network html
func.uinit html
generate_2networks html
generate_inv_cov html
getinvcov html
ggmgsa_multisplit html
ggmgsa_singlesplit html
glasso.invcor html
glasso.invcov html
glasso.parcor html
gsea.highdimT2 html
gsea.iriz html
gsea.iriz.scale html
gsea.iriz.shift html
gsea.t2cov html
het_cv_glasso html
hugepath html
inf.mat html
invcov2parcor html
invcov2parcor_array html
lambda.max html
lambdagrid_lin html
lambdagrid_mult html
loglik_mix html
logratio html
logratio.diffregr html
make_grid html
mcov html
mixglasso html
mixglasso_init html
mixglasso_ncomp_fixed html
mle.ggm html
my.ev2.diffregr html
my.p.adjust html
my.ttest html
my.ttest2 html
mytrunc.method html
perm.diffregr_pval html
perm.diffregr_teststat html
plot.diffnet html
plot.diffregr html
plot.ggmgsa html
plot.nethetclustering html
plotCV html
plot_2networks html
print.nethetsummary html
q.matrix.diffregr html
q.matrix.diffregr3 html
q.matrix.diffregr4 html
q.matrix3 html
q.matrix4 html
scatter_plot html
screen_aic.glasso html
screen_bic.glasso html
screen_cv.glasso html
screen_cv1se.lasso html
screen_cvfix.lasso html
screen_cvmin.lasso html
screen_cvsqrt.lasso html
screen_cvtrunc.lasso html
screen_full html
screen_shrink html
shapiro_screen html
sim_mix html
sim_mix_networks html
sparse_conc html
summary.diffnet html
summary.diffregr html
summary.ggmgsa html
summary.nethetclustering html
sumoffdiag html
symmkldist html
t2cov.lr html
t2diagcov.lr html
test.sd html
test.t2 html
tr html
twosample_single_regr html
w.kldist html
ww.mat html
ww.mat.diffregr html
ww.mat2 html
ww.mat2.diffregr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'nethet' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/nethet.buildbin-libdir/nethet/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet'
Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet'
* MD5 sums
packaged installation of 'nethet' as nethet_1.20.1.zip
* DONE (nethet)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'nethet' successfully unpacked and MD5 sums checked