Jianqiang Sun
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/TCC |
| Branch: RELEASE_3_11 |
| Last Commit: 61930ac |
| Last Changed Date: 2020-04-27 14:36:08 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE TCC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1783/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCC 1.28.0 Jianqiang Sun
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: TCC |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCC_1.28.0.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCC_1.28.0.zip && rm TCC_1.28.0.tar.gz TCC_1.28.0.zip |
| StartedAt: 2020-10-16 18:29:04 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:31:21 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 137.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCC_1.28.0.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCC_1.28.0.zip && rm TCC_1.28.0.tar.gz TCC_1.28.0.zip
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install for i386
* installing *source* package 'TCC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
converting help for package 'TCC'
finding HTML links ... done
ROKU html
TCC-class html
TCC html
WAD html
arab html
calcAUCValue html
calcNormFactors html
clusterSample html
estimateDE html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/estimateDE.Rd:66: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/estimateDE.Rd:73: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/estimateDE.Rd:81: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/estimateDE.Rd:128: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/estimateDE.Rd:152: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
filterLowCountGenes html
getNormalizedData html
getResult html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp0Ark7j/R.INSTALL22443f9e6f56/TCC/man/getResult.Rd:20: file link 'plot' in package 'TCC' does not exist and so has been treated as a topic
hypoData html
hypoData_mg html
hypoData_ts html
makeFCMatrix html
nakai html
plot.TCC html
plotFCPseudocolor html
simulateReadCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCC' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
* MD5 sums
packaged installation of 'TCC' as TCC_1.28.0.zip
* DONE (TCC)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'TCC' successfully unpacked and MD5 sums checked