Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD BIN report for TCC on machv2

This page was generated on 2020-10-17 11:59:46 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TCC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1783/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCC 1.28.0
Jianqiang Sun
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/TCC
Branch: RELEASE_3_11
Last Commit: 61930ac
Last Changed Date: 2020-04-27 14:36:08 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: TCC
Version: 1.28.0
Command: rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TCC_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TCC.buildbin-libdir
StartedAt: 2020-10-17 08:06:02 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 08:06:51 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 48.8 seconds
RetCode: 0
Status:  OK 
PackageFile: TCC_1.28.0.tgz
PackageFileSize: 1.873 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TCC_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TCC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TCC.buildbin-libdir TCC_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘TCC’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
Creating a new generic function for ‘calcNormFactors’ in package ‘TCC’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path
* DONE (TCC)