Multiple platform build/check report for BioC 3.11 - CHECK report for SPLINTER on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SPLINTER_1.13.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/SPLINTER.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SPLINTER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPLINTER’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SPLINTER’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
getPCRsizes          20.063  0.445  21.085
eventPlot            18.751  0.612  19.701
addEnsemblAnnotation  0.764  0.053  13.784
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SPLINTER
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘SPLINTER’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package keeps a record of temporary installation path
* DONE (SPLINTER)

Tests output

Example timings

name	user	system	elapsed
acceptor.m	1.144	0.004	1.194
addEnsemblAnnotation	0.764	0.053	13.784
callPrimer3	0.001	0.000	0.001
checkPrimer	0.138	0.007	0.145
compatible_cds	0.002	0.001	0.004
compatible_tx	0.002	0.002	0.003
donor.m	0.002	0.002	0.004
eventOutcomeCompare	3.159	0.396	3.556
eventOutcomeTranslate	0.894	0.021	0.915
eventPlot	18.751	0.612	19.701
extendROI	1.956	0.113	2.199
extractSpliceEvents	0.006	0.001	0.007
extractSpliceSites	0.185	0.001	0.188
findCompatibleEvents	0.881	0.003	0.917
findCompatibleExon	0.541	0.004	0.568
findTX	0.047	0.000	0.048
getPCRsizes	20.063	0.445	21.085
getRegionDNA	0.635	0.015	0.673
insertRegion	0.397	0.003	0.423
makeROI	0.902	0.057	1.054
makeUniqueIDs	0.006	0.000	0.006
pcr_result1	0.002	0.001	0.003
plot_seqlogo	0.077	0.003	0.083
primers	0.003	0.002	0.004
psiPlot	0.476	0.011	0.501
region_minus_exon	0.003	0.003	0.005
roi	0.002	0.002	0.004
shapiroAcceptor	1.091	0.024	1.172
shapiroDonor	1.021	0.032	1.162
splice_data	0.002	0.002	0.004
splice_fasta	0.003	0.003	0.005
splitPCRhit	0.022	0.001	0.023
thecds	0.002	0.002	0.003
theexons	0.002	0.002	0.005
valid_cds	0.002	0.002	0.004
valid_tx	0.002	0.001	0.004

CHECK report for SPLINTER on celaya2

Summary

Command output

Installation output

Tests output

Example timings