Diana Low
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SPLINTER |
| Branch: RELEASE_3_11 |
| Last Commit: 55c9f2e |
| Last Changed Date: 2020-04-27 15:02:11 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:51 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SPLINTER PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1719/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SPLINTER 1.14.0 Diana Low
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SPLINTER |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SPLINTER_1.14.0.tar.gz && rm -rf SPLINTER.buildbin-libdir && mkdir SPLINTER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPLINTER.buildbin-libdir SPLINTER_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SPLINTER_1.14.0.zip && rm SPLINTER_1.14.0.tar.gz SPLINTER_1.14.0.zip |
| StartedAt: 2020-10-16 19:38:33 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:40:45 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 132.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SPLINTER_1.14.0.tar.gz && rm -rf SPLINTER.buildbin-libdir && mkdir SPLINTER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPLINTER.buildbin-libdir SPLINTER_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SPLINTER_1.14.0.zip && rm SPLINTER_1.14.0.tar.gz SPLINTER_1.14.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 804k 100 804k 0 0 7070k 0 --:--:-- --:--:-- --:--:-- 7514k
install for i386
* installing *source* package 'SPLINTER' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** help
*** installing help indices
converting help for package 'SPLINTER'
finding HTML links ... done
acceptor.m html
addEnsemblAnnotation html
annotateEvents html
callPrimer3 html
checkPrimer html
compatible_cds html
compatible_tx html
donor.m html
eventOutcomeCompare html
eventOutcomeTranslate html
eventPlot html
extendROI html
extractSpliceEvents html
extractSpliceSites html
findCompatibleEvents html
findCompatibleExon html
findExactOverlaps html
findTX html
findTermination html
getPCRsizes html
getRegionDNA html
insertRegion html
makeROI html
makeUniqueIDs html
matchExons html
metaremove html
pcr_result1 html
plot_seqlogo html
primers html
psiPlot html
region_minus_exon html
removeRegion html
remvalue html
roi html
shapiroAcceptor html
shapiroDensity html
shapiroDonor html
splice_data html
splice_fasta html
splitPCRhit html
thecds html
theexons html
valid_cds html
valid_tx html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SPLINTER' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
* MD5 sums
packaged installation of 'SPLINTER' as SPLINTER_1.14.0.zip
* DONE (SPLINTER)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SPLINTER' successfully unpacked and MD5 sums checked