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INSTALL report for waveTiling on tokay1

This page was generated on 2020-04-15 12:20:50 -0400 (Wed, 15 Apr 2020).

Package 1802/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTiling 1.28.0
Kristof De Beuf
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/waveTiling
Branch: RELEASE_3_10
Last Commit: 13e6d5c
Last Changed Date: 2019-10-29 13:08:33 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: waveTiling
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/waveTiling_1.28.0.tar.gz && rm -rf waveTiling.buildbin-libdir && mkdir waveTiling.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waveTiling.buildbin-libdir waveTiling_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL waveTiling_1.28.0.zip && rm waveTiling_1.28.0.tar.gz waveTiling_1.28.0.zip
StartedAt: 2020-04-14 19:48:05 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:49:13 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 67.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/waveTiling_1.28.0.tar.gz && rm -rf waveTiling.buildbin-libdir && mkdir waveTiling.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waveTiling.buildbin-libdir waveTiling_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL waveTiling_1.28.0.zip && rm waveTiling_1.28.0.tar.gz waveTiling_1.28.0.zip
###
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100 32327  100 32327    0     0  97970      0 --:--:-- --:--:-- --:--:-- 99162

install for i386

* installing *source* package 'waveTiling' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c waveTiling.c -o waveTiling.o
waveTiling.c: In function 'MAPMARG':
waveTiling.c:10:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGEQSMOOTH':
waveTiling.c:43:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGIMP':
waveTiling.c:81:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGIMPEQSMOOTH':
waveTiling.c:114:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o waveTiling.dll tmp.def waveTiling.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/waveTiling.buildbin-libdir/00LOCK-waveTiling/00new/waveTiling/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
Warning message:
Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11 
** help
*** installing help indices
  converting help for package 'waveTiling'
    finding HTML links ... done
    GenomeInfo-class                        html  
    MapFilterProbe-class                    html  
    WaveTilingFeatureSet-class              html  
    finding level-2 HTML links ... done

    WfmFit-class                            html  
    WfmFitCircadian-class                   html  
    WfmFitCustom-class                      html  
    WfmFitFactor-class                      html  
    WfmFitTime-class                        html  
    WfmInf-class                            html  
    WfmInfCompare-class                     html  
    WfmInfCustom-class                      html  
    WfmInfEffects-class                     html  
    WfmInfMeans-class                       html  
    WfmInfOverallMean-class                 html  
    addPheno                                html  
    bgCorrQn                                html  
    cel2TilingFeatureSet                    html  
    filterOverlap                           html  
    getNonAnnotatedRegions                  html  
    getSigGenes                             html  
    makeContrasts                           html  
    makeDesign                              html  
    plotWfm                                 html  
    selectProbesFromFilterOverlap           html  
    selectProbesFromTilingFeatureSet        html  
    wfm.fit                                 html  
    wfm.inference                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
Warning: Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
Warning: Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'waveTiling' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c waveTiling.c -o waveTiling.o
waveTiling.c: In function 'MAPMARG':
waveTiling.c:10:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGEQSMOOTH':
waveTiling.c:43:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGIMP':
waveTiling.c:81:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
waveTiling.c: In function 'MAPMARGIMPEQSMOOTH':
waveTiling.c:114:11: warning: unused variable 'n' [-Wunused-variable]
 int i,j,m,n,Jcount=0;
           ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o waveTiling.dll tmp.def waveTiling.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/waveTiling.buildbin-libdir/waveTiling/libs/x64
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
Warning: Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11
* MD5 sums
packaged installation of 'waveTiling' as waveTiling_1.28.0.zip
* DONE (waveTiling)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'waveTiling' successfully unpacked and MD5 sums checked