Package: waveTiling

Version: 1.28.0

Command: rm -rf waveTiling.buildbin-libdir && mkdir waveTiling.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waveTiling_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R waveTiling.buildbin-libdir

StartedAt: 2020-04-15 09:04:58 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 09:06:16 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 78.2 seconds

RetCode: 0

Status:  OK

PackageFile: waveTiling_1.28.0.tgz

PackageFileSize: 886 KiB

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### Running command:
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###   rm -rf waveTiling.buildbin-libdir && mkdir waveTiling.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waveTiling_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R waveTiling.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=waveTiling.buildbin-libdir waveTiling_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘waveTiling’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c waveTiling.c -o waveTiling.o
waveTiling.c:10:11: warning: unused variable 'n' [-Wunused-variable]
int i,j,m,n,Jcount=0;
          ^
waveTiling.c:43:11: warning: unused variable 'n' [-Wunused-variable]
int i,j,m,n,Jcount=0;
          ^
waveTiling.c:81:11: warning: unused variable 'n' [-Wunused-variable]
int i,j,m,n,Jcount=0;
          ^
waveTiling.c:114:11: warning: unused variable 'n' [-Wunused-variable]
int i,j,m,n,Jcount=0;
          ^
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o waveTiling.so waveTiling.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/waveTiling.buildbin-libdir/00LOCK-waveTiling/00new/waveTiling/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
Warning message:
Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
Warning: Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
Warning: Package 'GenomeGraphs' is deprecated and will be removed from
  Bioconductor version 3.11
** testing if installed package keeps a record of temporary installation path
* DONE (waveTiling)


>>>>>>> 
>>>>>>> FIXING LINKS FOR waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "waveTiling.buildbin-libdir/waveTiling/libs//waveTiling.so"