BioC 3.1: CHECK report for imageHTS on moscato2
This page was generated on 2015-10-09 09:28:54 -0700 (Fri, 09 Oct 2015).
imageHTS 1.18.2 Joseph Barry
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/imageHTS | Last Changed Rev: 107850 / Revision: 109384 | Last Changed Date: 2015-08-27 14:23:24 -0700 (Thu, 27 Aug 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |  |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
Summary
Package: imageHTS
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Version: 1.18.2
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Command: E:\biocbld\bbs-3.1-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.18.2.tar.gz
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StartedAt: 2015-10-09 03:00:26 -0700 (Fri, 09 Oct 2015)
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EndedAt: 2015-10-09 03:04:16 -0700 (Fri, 09 Oct 2015)
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EllapsedTime: 229.7 seconds
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RetCode: 0
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Status: OK
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CheckDir: imageHTS.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### E:\biocbld\bbs-3.1-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.18.2.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/imageHTS.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.18.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [15s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [82s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
extractFeatures 27.97 1.24 29.22
countObjects 11.47 0.49 12.04
segmentWells 7.67 0.39 8.07
segmentYeastBF 4.64 0.51 5.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.1-bioc/meat/imageHTS.Rcheck/00check.log'
for details.
imageHTS.Rcheck/00install.out:
* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* DONE (imageHTS)
imageHTS.Rcheck/imageHTS-Ex.timings:
name | user | system | elapsed
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collectCellFeatures | 0 | 0 | 0 |
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countObjects | 11.47 | 0.49 | 12.04 |
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extractFeatures | 27.97 | 1.24 | 29.22 |
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fileHTS | 2.64 | 0.03 | 3.53 |
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getImageConf | 1.31 | 0.00 | 1.31 |
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getUnames | 3.41 | 0.01 | 3.43 |
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getWellFeatures | 4.03 | 0.00 | 4.02 |
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highlightSegmentation | 0 | 0 | 0 |
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installCellPicker | 2.01 | 0.02 | 2.05 |
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makeCellHTS | 0 | 0 | 0 |
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parseDCF | 0 | 0 | 0 |
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parseImageConf | 1.26 | 0.00 | 1.26 |
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popCellPicker | 1.25 | 0.00 | 1.25 |
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prw2uname | 0 | 0 | 0 |
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readLearnTS | 0 | 0 | 0 |
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segmentATH | 0 | 0 | 0 |
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segmentWells | 7.67 | 0.39 | 8.07 |
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segmentYeastBF | 4.64 | 0.51 | 5.15 |
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summarizeWells | 0 | 0 | 0 |
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zprime | 3.50 | 0.02 | 3.51 |
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