BioC 3.1: CHECK report for ENCODExplorer on moscato2
This page was generated on 2015-10-09 09:32:20 -0700 (Fri, 09 Oct 2015).
ENCODExplorer 1.0.6 Charles Joly Beauparlant
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/ENCODExplorer | Last Changed Rev: 108506 / Revision: 109384 | Last Changed Date: 2015-09-14 11:25:16 -0700 (Mon, 14 Sep 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |  |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: ENCODExplorer
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Version: 1.0.6
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Command: rm -rf ENCODExplorer.buildbin-libdir ENCODExplorer.Rcheck && mkdir ENCODExplorer.buildbin-libdir ENCODExplorer.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ENCODExplorer.buildbin-libdir ENCODExplorer_1.0.6.tar.gz >ENCODExplorer.Rcheck\00install.out 2>&1 && cp ENCODExplorer.Rcheck\00install.out ENCODExplorer-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=ENCODExplorer.buildbin-libdir --install="check:ENCODExplorer-install.out" --force-multiarch --no-vignettes --timings ENCODExplorer_1.0.6.tar.gz
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StartedAt: 2015-10-09 01:28:26 -0700 (Fri, 09 Oct 2015)
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EndedAt: 2015-10-09 01:29:30 -0700 (Fri, 09 Oct 2015)
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EllapsedTime: 64.0 seconds
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RetCode: 0
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Status: OK
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CheckDir: ENCODExplorer.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf ENCODExplorer.buildbin-libdir ENCODExplorer.Rcheck && mkdir ENCODExplorer.buildbin-libdir ENCODExplorer.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ENCODExplorer.buildbin-libdir ENCODExplorer_1.0.6.tar.gz >ENCODExplorer.Rcheck\00install.out 2>&1 && cp ENCODExplorer.Rcheck\00install.out ENCODExplorer-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=ENCODExplorer.buildbin-libdir --install="check:ENCODExplorer-install.out" --force-multiarch --no-vignettes --timings ENCODExplorer_1.0.6.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/ENCODExplorer.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ENCODExplorer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ENCODExplorer' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ENCODExplorer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [8s]
[8s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [8s]
[8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ENCODExplorer.Rcheck/00install.out:
install for i386
* installing *source* package 'ENCODExplorer' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ENCODExplorer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ENCODExplorer' as ENCODExplorer_1.0.6.zip
* DONE (ENCODExplorer)
ENCODExplorer.Rcheck/examples_i386/ENCODExplorer-Ex.timings:
name | user | system | elapsed
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downloadEncode | 0.41 | 0.01 | 0.42 |
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export_ENCODEdb_matrix | 0 | 0 | 0 |
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prepare_ENCODEdb | 0.36 | 0.14 | 0.69 |
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queryEncode | 0.56 | 0.00 | 0.56 |
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searchEncode | 0.14 | 0.11 | 0.25 |
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ENCODExplorer.Rcheck/examples_x64/ENCODExplorer-Ex.timings:
name | user | system | elapsed
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downloadEncode | 0.37 | 0.03 | 0.41 |
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export_ENCODEdb_matrix | 0 | 0 | 0 |
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prepare_ENCODEdb | 0.27 | 0.15 | 0.50 |
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queryEncode | 0.40 | 0.05 | 0.45 |
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searchEncode | 0.11 | 0.08 | 0.19 |
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