BioC 3.1: CHECK report for CopywriteR on moscato2
This page was generated on 2015-10-09 09:32:16 -0700 (Fri, 09 Oct 2015).
CopywriteR 2.0.6 Thomas Kuilman
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/CopywriteR | Last Changed Rev: 106387 / Revision: 109384 | Last Changed Date: 2015-07-14 14:29:40 -0700 (Tue, 14 Jul 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: CopywriteR
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Version: 2.0.6
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Command: rm -rf CopywriteR.buildbin-libdir CopywriteR.Rcheck && mkdir CopywriteR.buildbin-libdir CopywriteR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CopywriteR.buildbin-libdir CopywriteR_2.0.6.tar.gz >CopywriteR.Rcheck\00install.out 2>&1 && cp CopywriteR.Rcheck\00install.out CopywriteR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CopywriteR.buildbin-libdir --install="check:CopywriteR-install.out" --force-multiarch --no-vignettes --timings CopywriteR_2.0.6.tar.gz
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StartedAt: 2015-10-09 00:44:32 -0700 (Fri, 09 Oct 2015)
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EndedAt: 2015-10-09 00:49:06 -0700 (Fri, 09 Oct 2015)
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EllapsedTime: 273.9 seconds
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RetCode: 0
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Status: OK
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CheckDir: CopywriteR.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf CopywriteR.buildbin-libdir CopywriteR.Rcheck && mkdir CopywriteR.buildbin-libdir CopywriteR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CopywriteR.buildbin-libdir CopywriteR_2.0.6.tar.gz >CopywriteR.Rcheck\00install.out 2>&1 && cp CopywriteR.Rcheck\00install.out CopywriteR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CopywriteR.buildbin-libdir --install="check:CopywriteR-install.out" --force-multiarch --no-vignettes --timings CopywriteR_2.0.6.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/CopywriteR.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CopywriteR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CopywriteR' version '2.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CopywriteR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
CopywriteR.Rcheck/00install.out:
install for i386
* installing *source* package 'CopywriteR' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
install for x64
* installing *source* package 'CopywriteR' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'CopywriteR' as CopywriteR_2.0.6.zip
* DONE (CopywriteR)
CopywriteR.Rcheck/examples_i386/CopywriteR-Ex.timings:
name | user | system | elapsed
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CopywriteR | 0 | 0 | 0 |
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plotCNA | 0 | 0 | 0 |
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preCopywriteR | 0 | 0 | 0 |
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CopywriteR.Rcheck/examples_x64/CopywriteR-Ex.timings:
name | user | system | elapsed
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CopywriteR | 0 | 0 | 0 |
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plotCNA | 0.00 | 0.02 | 0.01 |
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preCopywriteR | 0 | 0 | 0 |
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