BioC 3.1: CHECK report for Clomial on petty
This page was generated on 2015-10-09 09:36:18 -0700 (Fri, 09 Oct 2015).
Clomial 1.4.0 Habil Zare
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/Clomial | Last Changed Rev: 102591 / Revision: 109384 | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: Clomial |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Clomial_1.4.0.tar.gz |
StartedAt: 2015-10-08 22:07:00 -0700 (Thu, 08 Oct 2015) |
EndedAt: 2015-10-08 22:09:12 -0700 (Thu, 08 Oct 2015) |
EllapsedTime: 131.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Clomial.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Clomial_1.4.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.1-bioc/meat/Clomial.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Clomial/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Clomial’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Clomial’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [96s/97s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
choose.best 40.064 0.096 40.200
Clomial-package 13.628 0.058 13.691
Clomial 13.291 0.023 13.317
compute.bic 8.792 0.019 8.813
Clomial.iterate 6.973 0.013 6.989
Clomial.likelihood 6.467 0.018 6.760
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Clomial.Rcheck/00install.out:
* installing *source* package ‘Clomial’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Clomial)
Clomial.Rcheck/Clomial-Ex.timings:
name | user | system | elapsed
|
Clomial-package | 13.628 | 0.058 | 13.691 |
|
Clomial | 13.291 | 0.023 | 13.317 |
|
Clomial.generate.data | 0.688 | 0.007 | 0.694 |
|
Clomial.iterate | 6.973 | 0.013 | 6.989 |
|
Clomial.likelihood | 6.467 | 0.018 | 6.760 |
|
Clomial1000 | 0.443 | 0.006 | 0.450 |
|
breastCancer | 0.003 | 0.001 | 0.005 |
|
choose.best | 40.064 | 0.096 | 40.200 |
|
compute.bic | 8.792 | 0.019 | 8.813 |
|
compute.errors | 4.736 | 0.028 | 4.766 |
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