BioC 3.1: CHECK report for Clomial on moscato2
This page was generated on 2015-10-09 09:31:00 -0700 (Fri, 09 Oct 2015).
Clomial 1.4.0 Habil Zare
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/Clomial | Last Changed Rev: 102591 / Revision: 109384 | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |  |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: Clomial
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Version: 1.4.0
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Command: rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.4.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.4.0.tar.gz
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StartedAt: 2015-10-09 00:24:36 -0700 (Fri, 09 Oct 2015)
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EndedAt: 2015-10-09 00:27:54 -0700 (Fri, 09 Oct 2015)
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EllapsedTime: 197.9 seconds
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RetCode: 0
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Status: OK
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CheckDir: Clomial.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.4.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.4.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/Clomial.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Clomial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Clomial' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Clomial' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [73s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
choose.best 31.36 0.00 31.36
Clomial-package 10.59 0.01 10.61
Clomial 8.69 0.00 8.69
compute.bic 6.15 0.00 6.14
Clomial.iterate 6.01 0.00 6.01
Clomial.likelihood 5.66 0.00 5.66
** running examples for arch 'x64' ... [91s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
choose.best 38.77 0 38.76
Clomial 12.41 0 12.41
Clomial-package 10.97 0 10.99
compute.bic 8.99 0 8.99
Clomial.iterate 7.22 0 7.22
Clomial.likelihood 5.37 0 5.37
compute.errors 5.14 0 5.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Clomial.Rcheck/00install.out:
install for i386
* installing *source* package 'Clomial' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Clomial' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clomial' as Clomial_1.4.0.zip
* DONE (Clomial)
Clomial.Rcheck/examples_i386/Clomial-Ex.timings:
name | user | system | elapsed
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Clomial-package | 10.59 | 0.01 | 10.61 |
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Clomial | 8.69 | 0.00 | 8.69 |
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Clomial.generate.data | 0.71 | 0.00 | 0.71 |
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Clomial.iterate | 6.01 | 0.00 | 6.01 |
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Clomial.likelihood | 5.66 | 0.00 | 5.66 |
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Clomial1000 | 0.28 | 0.02 | 0.30 |
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breastCancer | 0 | 0 | 0 |
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choose.best | 31.36 | 0.00 | 31.36 |
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compute.bic | 6.15 | 0.00 | 6.14 |
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compute.errors | 2.96 | 0.00 | 2.97 |
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Clomial.Rcheck/examples_x64/Clomial-Ex.timings:
name | user | system | elapsed
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Clomial-package | 10.97 | 0.00 | 10.99 |
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Clomial | 12.41 | 0.00 | 12.41 |
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Clomial.generate.data | 1.02 | 0.00 | 1.02 |
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Clomial.iterate | 7.22 | 0.00 | 7.22 |
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Clomial.likelihood | 5.37 | 0.00 | 5.37 |
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Clomial1000 | 0.33 | 0.00 | 0.33 |
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breastCancer | 0.01 | 0.00 | 0.02 |
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choose.best | 38.77 | 0.00 | 38.76 |
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compute.bic | 8.99 | 0.00 | 8.99 |
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compute.errors | 5.14 | 0.00 | 5.15 |
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