Package: HTqPCR

Version: 1.5.3

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HTqPCR_1.5.3.tar.gz

StartedAt: 2011-02-24 15:57:46 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 15:58:52 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 66.1 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.5.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'HTqPCR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	3.192	0.032	3.225
cbind	0.024	0.001	0.025
changeCtLayout	0.030	0.001	0.030
clusterCt	0.548	0.008	0.557
filterCategory	0.099	0.001	0.099
filterCtData	0.257	0.002	0.259
heatmapSig	1.726	0.011	1.736
limmaCtData	0.950	0.005	0.956
mannwhitneyCtData	1.549	0.002	1.550
normalizeCtData	0.442	0.005	0.449
plotCVBoxes	0.174	0.000	0.175
plotCtArray	0.153	0.002	0.154
plotCtBoxes	0.054	0.001	0.055
plotCtCard	0.052	0.001	0.053
plotCtCategory	2.404	0.021	2.426
plotCtCor	0.050	0.000	0.052
plotCtDensity	0.036	0.001	0.037
plotCtHeatmap	3.271	0.031	3.301
plotCtHistogram	0.011	0.001	0.011
plotCtOverview	0.116	0.001	0.118
plotCtPCA	0.044	0.000	0.045
plotCtPairs	0.730	0.002	0.732
plotCtRQ	0.416	0.002	0.416
plotCtReps	0.154	0.001	0.155
plotCtScatter	0.025	0.001	0.026
plotCtSignificance	0.451	0.008	0.460
plotCtVariation	0.792	0.003	0.795
plotGenes	0.027	0.001	0.028
qPCRpros	0.005	0.001	0.006
qPCRraw	0.007	0.000	0.008
qPCRset-class	0.029	0.001	0.030
readCtData	0.081	0.002	0.083
setCategory	4.626	0.090	4.717
ttestCtData	1.128	0.002	1.131