Package: HTqPCR

Version: 1.5.3

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HTqPCR_1.5.3.tar.gz

StartedAt: 2011-02-24 19:46:52 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:48:22 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 90.5 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.5.3’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	4.298	0.200	4.531
cbind	0.033	0.004	0.037
changeCtLayout	0.039	0.004	0.042
clusterCt	0.647	0.045	0.693
filterCategory	0.137	0.004	0.141
filterCtData	0.359	0.010	0.372
heatmapSig	2.266	0.024	2.312
limmaCtData	1.274	0.013	1.302
mannwhitneyCtData	2.164	0.008	2.183
normalizeCtData	0.599	0.025	0.628
plotCVBoxes	0.239	0.004	0.245
plotCtArray	0.167	0.010	0.178
plotCtBoxes	0.079	0.005	0.085
plotCtCard	0.074	0.003	0.079
plotCtCategory	3.445	0.045	3.511
plotCtCor	0.070	0.002	0.073
plotCtDensity	0.052	0.007	0.060
plotCtHeatmap	4.354	0.047	4.429
plotCtHistogram	0.015	0.002	0.015
plotCtOverview	0.157	0.004	0.161
plotCtPCA	0.061	0.005	0.066
plotCtPairs	1.013	0.009	1.028
plotCtRQ	0.540	0.004	0.559
plotCtReps	0.200	0.003	0.202
plotCtScatter	0.034	0.001	0.036
plotCtSignificance	0.606	0.018	0.633
plotCtVariation	1.078	0.008	1.095
plotGenes	0.036	0.002	0.039
qPCRpros	0.008	0.001	0.009
qPCRraw	0.010	0.001	0.011
qPCRset-class	0.046	0.003	0.049
readCtData	0.076	0.006	0.082
setCategory	6.255	0.232	6.523
ttestCtData	1.514	0.006	1.529