Package: GenomeGraphs

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.11.0.tar.gz

StartedAt: 2011-02-24 15:46:38 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 15:48:22 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 103.9 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0.001	0.000	0.002
BaseTrack-class	0.000	0.000	0.001
DisplayPars-class	0.001	0.000	0.001
DisplayPars	0.342	0.012	3.333
ExonArray-class	0.002	0.000	0.002
Gene-class	0.000	0.000	0.001
GeneModel-class	0.139	0.002	0.140
GeneRegion-class	0	0	0
GenericArray-class	0.000	0.001	0.001
GenomeAxis-class	0	0	0
HighlightRegion-class	0.001	0.000	0.001
Ideogram-class	0.000	0.000	0.001
ImplementsTrackOverlay-class	0.001	0.000	0.001
Legend-class	0.001	0.001	0.000
MappedRead-class	0	0	0
Overlay-class	0.001	0.000	0.001
RectangleOverlay-class	0.000	0.000	0.001
Segmentation-class	0.001	0.000	0.001
Smoothing-class	0.001	0.000	0.001
TextOverlay-class	0.000	0.000	0.001
Title-class	0.001	0.000	0.000
TrackOverlay-class	0.000	0.000	0.001
Transcript-class	0.001	0.000	0.000
TranscriptRegion-class	0.001	0.000	0.001
cn	0.000	0.000	0.001
exonProbePos	0	0	0
gdObject-class	0.001	0.000	0.002
gdPlot	1.758	0.018	63.422
getPar	0.001	0.000	0.002
ideogramTab	0.002	0.000	0.003
intensity	0	0	0
makeAnnotationTrack	0.026	0.000	0.026
makeBaseTrack	0.001	0.000	0.002
makeExonArray	0.001	0.001	0.001
makeGene	0.000	0.000	0.001
makeGeneModel	0	0	0
makeGeneRegion	0.001	0.000	0.001
makeGenericArray	0.001	0.000	0.001
makeGenomeAxis	0.000	0.000	0.001
makeIdeogram	0.001	0.000	0.000
makeLegend	0.001	0.001	0.001
makeRectangleOverlay	0.098	0.001	0.099
makeSegmentation	0.083	0.001	0.084
makeSmoothing	0.102	0.002	0.104
makeTextOverlay	0.090	0.001	0.091
makeTitle	0.001	0.000	0.001
makeTranscript	0.001	0.000	0.000
probestart	0	0	0
segEnd	0.000	0.001	0.000
segStart	0.001	0.000	0.000
segments	0	0	0
seqDataEx	0.031	0.001	0.032
setPar	0.016	0.000	0.017
showDisplayOptions	0.001	0.000	0.001
unrData	0.000	0.001	0.000
unrNProbes	0	0	0
unrPositions	0.000	0.000	0.001
yeastCons1	0.000	0.000	0.001