Package: GenomeGraphs

Version: 1.11.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.11.0.tar.gz

StartedAt: 2011-02-24 19:51:20 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:53:42 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 142.5 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* this is package ‘GenomeGraphs’ version ‘1.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GenomeGraphs’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0.004	0.000	0.001
BaseTrack-class	0.000	0.000	0.001
DisplayPars-class	0.000	0.000	0.002
DisplayPars	0.408	0.020	3.195
ExonArray-class	0.000	0.004	0.004
Gene-class	0	0	0
GeneModel-class	0.168	0.008	0.173
GeneRegion-class	0	0	0
GenericArray-class	0.000	0.000	0.001
GenomeAxis-class	0.000	0.000	0.001
HighlightRegion-class	0.000	0.000	0.001
Ideogram-class	0.000	0.000	0.001
ImplementsTrackOverlay-class	0.004	0.000	0.001
Legend-class	0	0	0
MappedRead-class	0	0	0
Overlay-class	0.000	0.000	0.001
RectangleOverlay-class	0.000	0.000	0.001
Segmentation-class	0.000	0.000	0.001
Smoothing-class	0.004	0.000	0.001
TextOverlay-class	0.000	0.000	0.001
Title-class	0.000	0.000	0.001
TrackOverlay-class	0.004	0.000	0.001
Transcript-class	0	0	0
TranscriptRegion-class	0.000	0.000	0.001
cn	0	0	0
exonProbePos	0	0	0
gdObject-class	0.000	0.000	0.002
gdPlot	1.716	0.000	104.922
getPar	0.000	0.000	0.001
ideogramTab	0.000	0.004	0.003
intensity	0	0	0
makeAnnotationTrack	0.028	0.000	0.029
makeBaseTrack	0.000	0.000	0.001
makeExonArray	0.004	0.000	0.002
makeGene	0.000	0.000	0.001
makeGeneModel	0.004	0.000	0.001
makeGeneRegion	0.000	0.000	0.002
makeGenericArray	0.000	0.000	0.001
makeGenomeAxis	0	0	0
makeIdeogram	0.000	0.000	0.001
makeLegend	0.000	0.000	0.001
makeRectangleOverlay	0.068	0.000	0.068
makeSegmentation	0.052	0.000	0.051
makeSmoothing	0.072	0.004	0.078
makeTextOverlay	0.060	0.000	0.063
makeTitle	0.000	0.000	0.001
makeTranscript	0.000	0.000	0.001
probestart	0.000	0.000	0.001
segEnd	0	0	0
segStart	0	0	0
segments	0	0	0
seqDataEx	0.020	0.000	0.021
setPar	0.012	0.000	0.012
showDisplayOptions	0.000	0.000	0.001
unrData	0	0	0
unrNProbes	0	0	0
unrPositions	0	0	0
yeastCons1	0	0	0