Package: Category

Version: 2.16.1

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Category_2.16.1.tar.gz

StartedAt: 2011-03-31 04:59:27 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:03:31 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 243.8 seconds

RetCode: 0

Status:  OK

CheckDir: Category.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/Category.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.16.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

name	user	system	elapsed
ChrBandTree-class	23.531	0.692	29.771
ChrMapHyperGParams-class	0.004	0.000	0.004
ChrMapHyperGResult-class	0.001	0.000	0.002
ChrMapLinearMParams-class	0.003	0.001	0.002
ChrMapLinearMResult-class	0.002	0.001	0.003
DatPkg-class	0.112	0.007	0.123
HyperGResult-accessors	1.376	0.112	1.879
LinearMParams-class	0.002	0.000	0.002
LinearMResult-class	0.002	0.001	0.003
LinearMResultBase-class	0.002	0.000	0.002
MAPAmat	17.964	0.715	24.763
applyByCategory	0.005	0.001	0.005
cateGOryMatrix	0.750	0.075	0.918
cb_parse_band_Hs	0.001	0.000	0.001
cb_parse_band_Mm	0.001	0.001	0.001
findAMstats	0.002	0.000	0.002
getPathNames	0.219	0.017	0.246
gseattperm	6.112	0.185	8.388
makeChrBandGraph	15.864	0.277	20.332
makeEBcontr	0.487	0.014	0.651
probes2MAP	0.378	0.016	0.456
probes2Path	0.120	0.008	0.187
ttperm	0.050	0.004	0.083