Package: Category

Version: 2.16.1

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings Category_2.16.1.tar.gz

StartedAt: 2011-04-07 05:21:33 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 05:24:05 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 151.7 seconds

RetCode: 0

Status:  OK

CheckDir: Category.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/Category.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.16.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

name	user	system	elapsed
ChrBandTree-class	25.337	0.104	25.533
ChrMapHyperGParams-class	0.000	0.000	0.001
ChrMapHyperGResult-class	0.004	0.000	0.001
ChrMapLinearMParams-class	0.000	0.000	0.001
ChrMapLinearMResult-class	0.000	0.000	0.001
DatPkg-class	0.076	0.004	0.082
HyperGResult-accessors	0.868	0.032	1.512
LinearMParams-class	0.000	0.000	0.001
LinearMResult-class	0.000	0.000	0.001
LinearMResultBase-class	0.000	0.000	0.001
MAPAmat	15.097	0.060	15.160
applyByCategory	0.004	0.000	0.003
cateGOryMatrix	0.448	0.016	0.596
cb_parse_band_Hs	0	0	0
cb_parse_band_Mm	0.000	0.000	0.001
findAMstats	0.000	0.000	0.001
getPathNames	0.164	0.004	0.169
gseattperm	3.773	0.084	3.875
makeChrBandGraph	13.092	0.020	13.111
makeEBcontr	0.364	0.008	0.372
probes2MAP	0.260	0.012	0.273
probes2Path	0.100	0.008	0.139
ttperm	0.028	0.000	0.030