Package: graph

Version: 1.26.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings graph_1.26.0.tar.gz

StartedAt: 2010-10-04 18:02:14 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 18:03:14 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 59.7 seconds

RetCode: 0

Status:  OK

CheckDir: graph.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.26.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'graph' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c graph.c -o graph.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o graph.so graph.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
mv graph.so BioC_graph.so
installing to /loc/home/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

name	user	system	elapsed
DFS	0.048	0.004	0.055
IMCA	0.372	0.008	0.381
MAPKsig	0.156	0.012	0.220
MultiGraph-class	0.052	0.004	0.056
acc-methods	0.02	0.00	0.02
addEdge	0.020	0.004	0.024
addNode	0.02	0.00	0.02
adj-methods	0.008	0.000	0.008
apoptosisGraph	0.080	0.000	0.076
attrData-class	0.004	0.000	0.002
aveNumEdges	0.020	0.000	0.019
biocRepos	0.004	0.000	0.002
boundary	0.012	0.000	0.014
buildRepDepGraph	0.004	0.000	0.000
calcProb	0	0	0
calcSumProb	0.016	0.000	0.015
clearNode	0.008	0.000	0.010
clusterGraph-class	0.008	0.000	0.008
clusteringCoefficient-methods	0.016	0.000	0.017
combineNodes	0.072	0.004	0.072
distGraph-class	0.000	0.000	0.002
duplicatedEdges	0.000	0.000	0.001
edgeMatrix	0.084	0.000	0.081
edgeWeights	0.012	0.000	0.012
fromGXL-methods	0.388	0.012	0.401
graph-class	0.012	0.000	0.014
graph2SparseM	0.336	0.000	0.338
graphAM-class	0.016	0.000	0.017
graphBAM-class	0.072	0.004	0.075
graphExamples	0.004	0.000	0.007
graphNEL-class	0.008	0.000	0.007
inEdges	0.008	0.000	0.005
leaves	0.020	0.000	0.018
listEdges	0.016	0.000	0.016
matrix2Graph	0.036	0.000	0.037
mostEdges	0.028	0.004	0.030
numNoEdges	0.008	0.000	0.008
pancrCaIni	0.140	0.004	0.142
randomEGraph	0.012	0.000	0.013
randomGraph	0.012	0.000	0.013
randomNodeGraph	0.008	0.000	0.009
removeEdge	0.016	0.000	0.018
removeNode	0.004	0.000	0.006
renderInfo-class	0.024	0.000	0.023
reverseEdgeDirections	0.012	0.000	0.010
simpleEdge-class	0.004	0.000	0.001
standardLabeling	0.056	0.004	0.060
subGraph	0.004	0.000	0.002
toDotR-methods	0.032	0.000	0.033
ugraph	0.012	0.000	0.015
validGraph	0.004	0.000	0.004