Package: graph

Version: 1.26.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings graph_1.26.0.tar.gz

StartedAt: 2010-10-04 18:36:08 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 18:37:32 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 83.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: graph.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.26.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package 'graph' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
mv graph.dll BioC_graph.dll
installing to E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

name	user	system	elapsed
DFS	0.06	0.00	0.06
IMCA	0.37	0.01	0.39
MAPKsig	0.14	0.03	0.36
MultiGraph-class	0.05	0.00	0.04
acc-methods	0.02	0.00	0.01
addEdge	0.01	0.00	0.02
addNode	0.02	0.00	0.02
adj-methods	0.01	0.00	0.01
apoptosisGraph	0.07	0.04	0.10
attrData-class	0.01	0.00	0.01
aveNumEdges	0.02	0.00	0.02
biocRepos	0.01	0.00	0.01
boundary	0.02	0.00	0.02
buildRepDepGraph	0	0	0
calcProb	0	0	0
calcSumProb	0.01	0.00	0.02
clearNode	0.02	0.00	0.01
clusterGraph-class	0	0	0
clusteringCoefficient-methods	0.02	0.00	0.02
combineNodes	0.06	0.00	0.06
distGraph-class	0	0	0
duplicatedEdges	0	0	0
edgeMatrix	0.05	0.00	0.05
edgeWeights	0.02	0.00	0.02
fromGXL-methods	0.34	0.03	0.43
graph-class	0.02	0.00	0.02
graph2SparseM	0.26	0.03	0.30
graphAM-class	0.02	0.00	0.02
graphBAM-class	0.06	0.00	0.07
graphExamples	0.00	0.01	0.26
graphNEL-class	0.01	0.00	0.02
inEdges	0	0	0
leaves	0.04	0.00	0.04
listEdges	0.01	0.00	0.02
matrix2Graph	0.03	0.00	0.03
mostEdges	0.02	0.00	0.01
numNoEdges	0	0	0
pancrCaIni	0.15	0.00	0.19
randomEGraph	0.02	0.00	0.02
randomGraph	0	0	0
randomNodeGraph	0	0	0
removeEdge	0.02	0.00	0.02
removeNode	0	0	0
renderInfo-class	0	0	0
reverseEdgeDirections	0.02	0.00	0.02
simpleEdge-class	0	0	0
standardLabeling	0.08	0.00	0.08
subGraph	0	0	0
toDotR-methods	0.03	0.01	1.26
ugraph	0	0	0
validGraph	0	0	0