yeastExpData 0.9.17
R. Gentleman
| Snapshot Date: 2010-04-02 12:27:31 -0700 (Fri, 02 Apr 2010) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastExpData | | Last Changed Rev: 1099 / Revision: 1201 | | Last Changed Date: 2009-12-03 10:39:42 -0800 (Thu, 03 Dec 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ WARNINGS ] | |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-data-experiment/meat/yeastExpData.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'yeastExpData/DESCRIPTION' ... OK
* this is package 'yeastExpData' version '0.9.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yeastExpData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data codoc mismatches from documentation object 'gfp':
Variables in data frame 'gfp'
Code: abundance actin ambiguous bud bud_neck cell_periphery cytoplasm
early_Golgi endosome ER ER_to_Golgi error gene_name GFP_tagged
GFP_visualized Golgi late_Golgi lipid_particle
localization_summary microtubule missingAbundance mitochondrion
nuclear_periphery nucleolus nucleus orfid peroxisome
punctate_composite spindle_pole TAP_visualized
vacuolar_membrane vacuole yORF
Docs: abundance error gene_name GFP_tagged GFP_visualized
localization_summary orfid TAP_visualized yORF
Data codoc mismatches from documentation object 'proteinProperties':
Variables in data frame 'proteinProperties'
Code: ALA ARG aromaticity ASN ASP cai codonBias cterm CYS fop GLN GLU
GLY gravy HIS ILE length LEU LYS MET molwt nterm PHE pi PRO SER
SGDID THR TRP type TYR VAL yORF
Docs: cai codonBias cterm length molwt nterm pi SGDID yORF
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.5-data-experiment/meat/yeastExpData.Rcheck/00check.log
for details