yeastExpData 0.9.17
R. Gentleman
| Snapshot Date: 2010-04-02 12:27:31 -0700 (Fri, 02 Apr 2010) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastExpData | | Last Changed Rev: 1099 / Revision: 1201 | | Last Changed Date: 2009-12-03 10:39:42 -0800 (Thu, 03 Dec 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.5-data-experiment/meat/yeastExpData.Rcheck'
* using R version 2.10.1 Patched (2009-12-14 r50738)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'yeastExpData/DESCRIPTION' ... OK
* this is package 'yeastExpData' version '0.9.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yeastExpData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data codoc mismatches from documentation object 'gfp':
Variables in data frame 'gfp'
Code: ER ER_to_Golgi GFP_tagged GFP_visualized Golgi TAP_visualized
abundance actin ambiguous bud bud_neck cell_periphery cytoplasm
early_Golgi endosome error gene_name late_Golgi lipid_particle
localization_summary microtubule missingAbundance mitochondrion
nuclear_periphery nucleolus nucleus orfid peroxisome
punctate_composite spindle_pole vacuolar_membrane vacuole yORF
Docs: GFP_tagged GFP_visualized TAP_visualized abundance error
gene_name localization_summary orfid yORF
Data codoc mismatches from documentation object 'proteinProperties':
Variables in data frame 'proteinProperties'
Code: ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER
SGDID THR TRP TYR VAL aromaticity cai codonBias cterm fop gravy
length molwt nterm pi type yORF
Docs: SGDID cai codonBias cterm length molwt nterm pi yORF
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.5-data-experiment/meat/yeastExpData.Rcheck/00check.log
for details