HilbertVisGUI 1.0.5
Simon Anders
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 38235 / Revision: 38965 | | Last Changed Date: 2009-03-26 11:09:28 -0700 (Thu, 26 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ WARNINGS ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.0.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
Xlib: extension "RANDR" missing on display ":4363.0".
(<unknown>:21466): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
Xlib: extension "RANDR" missing on display ":4363.0".
Xlib: extension "RANDR" missing on display ":4363.0".
Xlib: extension "RANDR" missing on display ":4363.0".
* checking Rd \usage sections ... NOTE
Xlib: extension "RANDR" missing on display ":4363.0".
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating HilbertVisGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating HilbertVisGUI-manual.tex ... OK
* checking HilbertVisGUI-manual.tex using pdflatex ... OK
WARNING: There were 6 warnings, see
/loc/home/biocbuild/bbs-2.3-bioc/meat/HilbertVisGUI.Rcheck/00check.log
for details
* Installing *source* package 'HilbertVisGUI' ...
Checking for pkg-config... /usr/bin/pkg-config
Checking for gtkmm-2.4... found: version 2.14.1
** libs
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c colorizers.cc -o colorizers.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c display.cc -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fpic -g -O2 -Wall -c R_env_prot.c -o R_env_prot.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c R_interface.cc -o R_interface.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c ruler.cc -o ruler.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c window.cc -o window.o
g++ -shared -L/usr/local/lib64 -o HilbertVisGUI.so colorizers.o display.o R_env_prot.o R_interface.o ruler.o window.o `pkg-config gtkmm-2.4 --libs` -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: HilbertVis
** help
>>> Building/Updating help pages for package 'HilbertVisGUI'
Formats: text html latex example
dotsapply text html latex
hilbertDisplay text html latex example
hilbertDisplayThreeChannel text html latex
simpleLinPlot text html latex
** building package indices ...
* DONE (HilbertVisGUI)