HilbertVisGUI 1.0.5
Simon Anders
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 38235 / Revision: 38965 | | Last Changed Date: 2009-03-26 11:09:28 -0700 (Thu, 26 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.0.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
(Rterm.exe:1940): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
tools:::.check_code_usage_in_package(package = "HilbertVisGUI")
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CFLAGS':
-mms-bitfields
Non-portable flags in variable 'PKG_CPPFLAGS':
-mms-bitfields
* checking for portable use of $BLAS_LIBS ... OK
* creating HilbertVisGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating HilbertVisGUI-manual.tex ... OK
* checking HilbertVisGUI-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.3-bioc/meat/HilbertVisGUI.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/HilbertVisGUI.Rcheck
---------- Making package HilbertVisGUI ------------
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making R_env_prot.d from R_env_prot.c
making R_interface.d from R_interface.cc
making colorizers.d from colorizers.cc
making display.d from display.cc
making ruler.d from ruler.cc
making window.d from window.cc
gcc -std=gnu99 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O3 -Wall -c R_env_prot.c -o R_env_prot.o
g++ `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c R_interface.cc -o R_interface.o
In file included from e:/biocbld/bbs-2.3-bioc/R/include/R.h:50,
from R_interface.cc:30:
e:/biocbld/bbs-2.3-bioc/R/include/R_ext/RS.h:43:1: warning: "ERROR" redefined
In file included from c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/windows.h:52,
from R_interface.cc:25:
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++ `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c colorizers.cc -o colorizers.o
g++ `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c display.cc -o display.o
g++ `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c ruler.cc -o ruler.o
g++ `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c window.cc -o window.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i HilbertVisGUI_res.rc -o HilbertVisGUI_res.o
g++ -shared -s -o HilbertVisGUI.dll HilbertVisGUI.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o HilbertVisGUI_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin `pkg-config gtkmm-2.4 --libs` -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package HilbertVisGUI for lazy loading
Loading required package: HilbertVis
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'HilbertVisGUI'
Formats: text html latex example chm
dotsapply text html latex chm
hilbertDisplay text html latex example chm
hilbertDisplayThreeChannel text html latex chm
simpleLinPlot text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\HilbertVisGUI.Rcheck\00_pkg_src\HilbertVisGUI\chm\HilbertVisGUI.chm
Compile time: 0 minutes, 0 seconds
5 Topics
18 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\HilbertVisGUI.Rcheck\00_pkg_src\HilbertVisGUI\chm\HilbertVisGUI.chm, 25,568 bytes
Compression increased file by 2,956 bytes.
adding MD5 sums
* DONE (HilbertVisGUI)