ontoTools 1.15.0
Vince Carey
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ontoTools | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/ontoTools.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'ontoTools/DESCRIPTION' ... OK
* this is package 'ontoTools' version '1.15.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ontoTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ontoTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoToolsArchiving.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoToolsArchiving.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoToolsArchiving.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoTools.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoTools.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './ontoTools.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sgdiOnto.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sgdiOnto.tex' ...
* creating ontoTools-manual.tex ... OK
* checking ontoTools-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/ontoTools.Rcheck
* Installing *source* package 'ontoTools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: SparseM
Package SparseM (0.74) loaded. To cite, see citation("SparseM")
Loading required package: GO
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Creating a new generic function for "grep" in "ontoTools"
** help
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \references
>>> Building/Updating help pages for package 'ontoTools'
Formats: text html latex example
A.csr text html latex
GDI text html latex example
LLGOMFcp text html latex
OOC-class text html latex example
SGDIvocab text html latex example
STMA text html latex example
accessMat text html latex
buildGOgraph text html latex example
compoundGraph-class text html latex
depthStruct text html latex example
gomfAmat text html latex
litOnto text html latex
namedSparse-class text html latex example
ontology-class text html latex example
ooMapLL2GOMFdemo text html latex
otkvEnv2namedSparse text html latex example
rootedDAG-class text html latex
semsim text html latex example
taggedHierNomenclature-class text html latex example
toDot-methods text html latex example
** building package indices ...
* DONE (ontoTools)